AutismKB 2.0

Annotation Detail for ATG2A


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Basic Information Top
Gene Symbol:ATG2A ( KIAA0404,MGC117153 )
Gene Full Name: ATG2 autophagy related 2 homolog A (S. cerevisiae)
Band: 11q13.1
Quick LinksEntrez ID:23130; OMIM: NA; Uniprot ID:ATG2A_HUMAN; ENSEMBL ID: ENSG00000110046; HGNC ID: 29028
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult28 / 193912114
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor3 / 3436687
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor5 / 26384518
glioma6 / 10688356
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia5 / 9584252
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma5 / 7175569
non-neoplasia0 / 972500 
normal35 / 336030710
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer2 / 10268019
retinoblastoma4 / 4635686
skin tumor5 / 12494940
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood4 / 12347832
bone3 / 7165541
bone marrow1 / 4880120
brain18 / 110098916
cervix3 / 4817162
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye9 / 21105442
heart0 / 896260 
intestine6 / 23447225
kidney3 / 21177714
larynx0 / 241450 
liver2 / 2077439
lung4 / 33697411
lymph5 / 44270112
lymph node3 / 9161032
mammary gland0 / 1532710 
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary3 / 10205129
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate3 / 18934515
salivary gland1 / 2015549
skin7 / 21057433
spleen0 / 539520 
stomach3 / 9661931
testis0 / 3304420 
thymus3 / 8113136
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213300_at
Cell line Expression level Expression bar
721_B_lymphoblasts67.9
Adipocyte21.4
AdrenalCortex17.85
Adrenalgland28.8
Amygdala68.55
Appendix20.2
AtrioventricularNode15.85
BDCA4+_DentriticCells132.35
Bonemarrow59.55
BronchialEpithelialCells24.85
CD105+_Endothelial102.8
CD14+_Monocytes82.1
CD19+_BCells(neg._sel.)79.7
CD33+_Myeloid127.95
CD34+87.3
CD4+_Tcells91.05
CD56+_NKCells137.55
CD71+_EarlyErythroid164.1
CD8+_Tcells127.7
CardiacMyocytes41.15
Caudatenucleus23
Cerebellum28.05
CerebellumPeduncles38.4
CiliaryGanglion19.7
CingulateCortex22.3
Colorectaladenocarcinoma108.05
DorsalRootGanglion23.2
FetalThyroid45.9
Fetalbrain38
Fetalliver34.9
Fetallung35
GlobusPallidus15.3
Heart158.65
Hypothalamus49.85
Kidney19.5
Leukemia_chronicMyelogenousK-56271.5
Leukemia_promyelocytic-HL-6017.75
Leukemialymphoblastic(MOLT-4)25.35
Liver111.15
Lung117.4
Lymphnode41.4
Lymphoma_burkitts(Daudi)53.65
Lymphoma_burkitts(Raji)109
MedullaOblongata23
OccipitalLobe25.9
OlfactoryBulb24.8
Ovary17.85
Pancreas43.9
PancreaticIslet39.85
ParietalLobe14.95
Pituitary22
Placenta41.55
Pons44.55
PrefrontalCortex63.75
Prostate137.9
Salivarygland14.2
SkeletalMuscle7.1
Skin26.8
SmoothMuscle26
Spinalcord21.2
SubthalamicNucleus18.95
SuperiorCervicalGanglion33.55
TemporalLobe37.65
Testis62.35
TestisGermCell30.85
TestisIntersitial30.4
TestisLeydigCell32.7
TestisSeminiferousTubule18.85
Thalamus30.55
Thymus69.1
Thyroid127.9
Tongue27.45
Tonsil38.5
Trachea25.15
TrigeminalGanglion20.15
Uterus42.1
UterusCorpus25.8
WholeBlood178.5
Wholebrain40.1
colon37.9
pineal_day71.36
pineal_night62.32
retina80.025
small_intestine35.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_2055_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.88 ± 0.71
Basal Forebrain3.71 ± 0.4
Basal Part of Pons3.7 ± 0.62
Cerebellar Cortex4.08 ± 0.46
Cerebellar Nuclei3.49 ± 0.48
Claustrum3.97 ± 0.76
Epithalamus3.91 ± 0.56
Frontal Lobe3.7 ± 0.56
Globus Pallidus3.45 ± 0.26
Hypothalamus3.21 ± 0.51
Insula3.61 ± 0.51
Limbic Lobe3.62 ± 0.58
Mesencephalon3.65 ± 0.53
Myelencephalon3.71 ± 0.55
Occipital Lobe3.52 ± 0.6
Parietal Lobe3.63 ± 0.42
Pontine Tegmentum3.6 ± 0.68
Striatum3.41 ± 0.67
Subthalamus3.66 ± 0.13
Temporal Lobe3.71 ± 0.5
Thalamus3.69 ± 0.53
White Matter4.41 ± 0.14
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
1810013C15RikCBCerebellum6.83
6.34
1810013C15RikCTXCerebral cortex10.04
6.41
1810013C15RikHIPHippocampal region7.64
6.24
1810013C15RikHPFHippocampal formation7.11
5.43
1810013C15RikHYHypothalamus3.11
2.1
1810013C15RikLSXLateral septal complex1.16
0.87
1810013C15RikMBMidbrain3.52
3.12
1810013C15RikMYMedulla8.63
8.76
1810013C15RikOLFOlfactory bulb7.47
4.75
1810013C15RikPPons7.4
6.84
1810013C15RikPALPallidum7.24
5.61
1810013C15RikRHPRetrohippocampal region6.32
4.36
1810013C15RiksAMYStriatum-like amygdalar nuclei6.32
4.1
1810013C15RikSTRStriatum1.82
1.2
1810013C15RikSTRdStriatum dorsal region1.22
0.83
1810013C15RikSTRvStriatum ventral region1.81
1.09
1810013C15RikTHThalamus3.41
2.47
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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