AutismKB 2.0

Annotation Detail for SNX13


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Basic Information Top
Gene Symbol:SNX13 ( KIAA0713,RGS-PX1 )
Gene Full Name: sorting nexin 13
Band: 7p21.1
Quick LinksEntrez ID:23161; OMIM: 606589; Uniprot ID:SNX13_HUMAN; ENSEMBL ID: ENSG00000071189; HGNC ID: 21335
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus30 / 56401253
neonate2 / 3109764
infant0 / 236200 
juvenile2 / 5555635
adult92 / 193912147
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor3 / 11424626
esophageal tumor2 / 17290115
gastrointestinal tumor3 / 11936925
germ cell tumor3 / 26384511
glioma1 / 1068839
head and neck tumor4 / 13630229
kidney tumor5 / 6895972
leukemia1 / 9584210
liver tumor4 / 9635941
lung tumor1 / 1031279
lymphoma2 / 7175527
non-neoplasia4 / 9725041
normal167 / 336030749
ovarian tumor2 / 7668226
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer1 / 1026809
retinoblastoma1 / 4635621
skin tumor2 / 12494916
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder1 / 2975733
blood1 / 1234788
bone4 / 7165555
bone marrow4 / 4880181
brain33 / 110098929
cervix1 / 4817120
connective tissue3 / 14925520
ear1 / 1621261
embryonic tissue16 / 21572274
esophagus2 / 2020998
eye7 / 21105433
heart3 / 8962633
intestine3 / 23447212
kidney12 / 21177756
larynx0 / 241450 
liver16 / 20774377
lung14 / 33697441
lymph0 / 442700 
lymph node6 / 9161065
mammary gland8 / 15327152
mouth1 / 6705214
muscle15 / 107715139
nerve2 / 15768126
ovary3 / 10205129
pancreas16 / 21481274
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland3 / 16585180
placenta18 / 28082564
prostate1 / 1893455
salivary gland0 / 201550 
skin4 / 21057418
spleen0 / 539520 
stomach3 / 9661931
testis30 / 33044290
thymus1 / 8113112
thyroid3 / 4747363
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus13 / 23287855
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 215820_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.5
Adipocyte6.6
AdrenalCortex8.2
Adrenalgland6.05
Amygdala6.75
Appendix9.6
AtrioventricularNode6.7
BDCA4+_DentriticCells6.7
Bonemarrow7.25
BronchialEpithelialCells6.4
CD105+_Endothelial6.6
CD14+_Monocytes7.15
CD19+_BCells(neg._sel.)6.85
CD33+_Myeloid8.85
CD34+7.9
CD4+_Tcells6.8
CD56+_NKCells7.45
CD71+_EarlyErythroid6.4
CD8+_Tcells6.05
CardiacMyocytes10.65
Caudatenucleus6.05
Cerebellum5.6
CerebellumPeduncles8.45
CiliaryGanglion5.85
CingulateCortex10.35
Colorectaladenocarcinoma6.65
DorsalRootGanglion6
FetalThyroid6.75
Fetalbrain6.45
Fetalliver6.05
Fetallung5.1
GlobusPallidus5.45
Heart10.4
Hypothalamus6.95
Kidney6.1
Leukemia_chronicMyelogenousK-5626
Leukemia_promyelocytic-HL-605.95
Leukemialymphoblastic(MOLT-4)5.15
Liver10.1
Lung7.25
Lymphnode5.5
Lymphoma_burkitts(Daudi)8.95
Lymphoma_burkitts(Raji)10.35
MedullaOblongata6.6
OccipitalLobe6
OlfactoryBulb5.2
Ovary4.85
Pancreas5.6
PancreaticIslet7.35
ParietalLobe8.2
Pituitary7.8
Placenta6.6
Pons6.75
PrefrontalCortex8.2
Prostate7.65
Salivarygland5.65
SkeletalMuscle10
Skin6.1
SmoothMuscle7.5
Spinalcord7.15
SubthalamicNucleus6.45
SuperiorCervicalGanglion13.65
TemporalLobe8.3
Testis5.7
TestisGermCell5.3
TestisIntersitial6.35
TestisLeydigCell7.15
TestisSeminiferousTubule6.9
Thalamus7.05
Thymus5
Thyroid8
Tongue8.95
Tonsil6.75
Trachea5.55
TrigeminalGanglion8.05
Uterus5.25
UterusCorpus6.8
WholeBlood7.3
Wholebrain5.3
colon6.8
pineal_day8.22
pineal_night8.08
retina8.15
small_intestine6.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P256342
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.22 ± 0.31
Basal Forebrain7.38 ± 0.17
Basal Part of Pons7.44 ± 0.13
Cerebellar Cortex7.33 ± 0.22
Cerebellar Nuclei7.39 ± 0.29
Claustrum7.17 ± 0.38
Epithalamus7.67 ± 0.35
Frontal Lobe7.49 ± 0.25
Globus Pallidus7.69 ± 0.24
Hypothalamus7.47 ± 0.11
Insula7.54 ± 0.19
Limbic Lobe7.42 ± 0.26
Mesencephalon7.46 ± 0.31
Myelencephalon7.42 ± 0.25
Occipital Lobe7.28 ± 0.31
Parietal Lobe7.39 ± 0.22
Pontine Tegmentum7.37 ± 0.26
Striatum7.32 ± 0.22
Subthalamus7.5 ± 0.19
Temporal Lobe7.48 ± 0.23
Thalamus7.42 ± 0.24
White Matter8.17 ± 0.02
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Snx13CBCerebellum26.79
46.09
Snx13CTXCerebral cortex83.69
69.3
Snx13HIPHippocampal region42.9
67.08
Snx13HPFHippocampal formation51.57
61.66
Snx13HYHypothalamus25.74
19.65
Snx13LSXLateral septal complex35.73
26.74
Snx13MBMidbrain34.02
32.07
Snx13MYMedulla28.4
31.47
Snx13OLFOlfactory bulb58.49
52.23
Snx13PPons31.56
34.23
Snx13PALPallidum32.58
29.21
Snx13RHPRetrohippocampal region67.75
56.99
Snx13sAMYStriatum-like amygdalar nuclei24.56
17.11
Snx13STRStriatum31.16
22.41
Snx13STRdStriatum dorsal region29.96
21.96
Snx13STRvStriatum ventral region36.97
24.45
Snx13THThalamus35.92
31.5
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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