Annotation Detail for FAF2
Basic Information Top
| Gene Symbol: | FAF2 ( ETEA,KIAA0887,UBXD8,UBXN3B ) |
|---|---|
| Gene Full Name: | Fas associated factor family member 2 |
| Band: | 5q35.2 |
| Quick Links | Entrez ID:23197; OMIM: NA; Uniprot ID:FAF2_HUMAN; ENSEMBL ID: ENSG00000113194; HGNC ID: 24666 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.484242
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 9 / 70761 | 127 |  |
| blastocyst | 6 / 62319 | 96 | |
| fetus | 57 / 564012 | 101 | |
| neonate | 1 / 31097 | 32 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 148 / 1939121 | 76 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 12 / 94178 | 127 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 15 / 114246 | 131 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 19 / 119369 | 159 | |
| germ cell tumor | 18 / 263845 | 68 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 237 / 3360307 | 70 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 26 / 104616 | 248 |  |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 11 / 102680 | 107 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 10 / 90257 | 110 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 9 / 40015 | 224 | |
| bladder | 0 / 29757 | 0 | |
| blood | 6 / 123478 | 48 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 37 / 1100989 | 33 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 4 / 16212 | 246 | |
| embryonic tissue | 22 / 215722 | 101 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 19 / 211054 | 90 | |
| heart | 17 / 89626 | 189 | |
| intestine | 35 / 234472 | 149 | |
| kidney | 15 / 211777 | 70 | |
| larynx | 1 / 24145 | 41 | |
| liver | 9 / 207743 | 43 | |
| lung | 29 / 336974 | 86 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 21 / 153271 | 137 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 11 / 107715 | 102 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 36 / 214812 | 167 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 3 / 41328 | 72 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 11 / 280825 | 39 | |
| prostate | 12 / 189345 | 63 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 16 / 210574 | 75 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 6 / 96619 | 62 | |
| testis | 22 / 330442 | 66 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 17 / 232878 | 72 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 212108_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 74.75 | |
| Adipocyte | 38.2 | |
| AdrenalCortex | 41.85 | |
| Adrenalgland | 33.65 | |
| Amygdala | 37.2 | |
| Appendix | 36 | |
| AtrioventricularNode | 26.9 | |
| BDCA4+_DentriticCells | 40.5 | |
| Bonemarrow | 34.95 | |
| BronchialEpithelialCells | 109.25 | |
| CD105+_Endothelial | 45.7 | |
| CD14+_Monocytes | 27.1 | |
| CD19+_BCells(neg._sel.) | 21.25 | |
| CD33+_Myeloid | 56.7 | |
| CD34+ | 67.65 | |
| CD4+_Tcells | 37.9 | |
| CD56+_NKCells | 45.45 | |
| CD71+_EarlyErythroid | 31.25 | |
| CD8+_Tcells | 35.25 | |
| CardiacMyocytes | 51.15 | |
| Caudatenucleus | 32.2 | |
| Cerebellum | 29.05 | |
| CerebellumPeduncles | 42.55 | |
| CiliaryGanglion | 23.65 | |
| CingulateCortex | 32.3 | |
| Colorectaladenocarcinoma | 44 | |
| DorsalRootGanglion | 24.65 | |
| FetalThyroid | 37.7 | |
| Fetalbrain | 36.3 | |
| Fetalliver | 31.55 | |
| Fetallung | 28.65 | |
| GlobusPallidus | 24 | |
| Heart | 40.5 | |
| Hypothalamus | 39.6 | |
| Kidney | 27.85 | |
| Leukemia_chronicMyelogenousK-562 | 32.8 | |
| Leukemia_promyelocytic-HL-60 | 27.3 | |
| Leukemialymphoblastic(MOLT-4) | 36.5 | |
| Liver | 46.2 | |
| Lung | 30.85 | |
| Lymphnode | 31.35 | |
| Lymphoma_burkitts(Daudi) | 46 | |
| Lymphoma_burkitts(Raji) | 44.05 | |
| MedullaOblongata | 32.95 | |
| OccipitalLobe | 33.7 | |
| OlfactoryBulb | 29.05 | |
| Ovary | 20.15 | |
| Pancreas | 29.5 | |
| PancreaticIslet | 38.75 | |
| ParietalLobe | 37.55 | |
| Pituitary | 45.85 | |
| Placenta | 62.1 | |
| Pons | 34.1 | |
| PrefrontalCortex | 45.15 | |
| Prostate | 43.6 | |
| Salivarygland | 28.45 | |
| SkeletalMuscle | 45.5 | |
| Skin | 27.15 | |
| SmoothMuscle | 75.05 | |
| Spinalcord | 35.9 | |
| SubthalamicNucleus | 30.45 | |
| SuperiorCervicalGanglion | 41.1 | |
| TemporalLobe | 32.85 | |
| Testis | 51.45 | |
| TestisGermCell | 57.95 | |
| TestisIntersitial | 33.65 | |
| TestisLeydigCell | 35.8 | |
| TestisSeminiferousTubule | 45.45 | |
| Thalamus | 36.45 | |
| Thymus | 32.3 | |
| Thyroid | 43 | |
| Tongue | 34.7 | |
| Tonsil | 45.9 | |
| Trachea | 30.15 | |
| TrigeminalGanglion | 35.1 | |
| Uterus | 28.9 | |
| UterusCorpus | 33.25 | |
| WholeBlood | 37.85 | |
| Wholebrain | 29.55 | |
| colon | 36.2 | |
| pineal_day | 69.92 | |
| pineal_night | 63.3 | |
| retina | 43.825 | |
| small_intestine | 35.05 | |
- Probe name: A_23_P156109
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.1 ± 0.3 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.06 ± 0.17 | |
| Basal Part of Pons | 7.12 ± 0.19 | |
| Cerebellar Cortex | 7.26 ± 0.28 | |
| Cerebellar Nuclei | 6.97 ± 0.25 | |
| Claustrum | 6.85 ± 0.43 | |
| Epithalamus | 7.1 ± 0.25 | |
| Frontal Lobe | 7.04 ± 0.27 | |
| Globus Pallidus | 6.89 ± 0.23 | |
| Hypothalamus | 6.97 ± 0.33 | |
| Insula | 7.08 ± 0.16 | |
| Limbic Lobe | 7.13 ± 0.31 | |
| Mesencephalon | 7.04 ± 0.42 | |
| Myelencephalon | 7.03 ± 0.3 | |
| Occipital Lobe | 7.18 ± 0.27 | |
| Parietal Lobe | 7.05 ± 0.25 | |
| Pontine Tegmentum | 7.03 ± 0.31 | |
| Striatum | 7 ± 0.32 | |
| Subthalamus | 7.19 ± 0.23 | |
| Temporal Lobe | 7.06 ± 0.32 | |
| Thalamus | 7.08 ± 0.2 | |
| White Matter | 7.19 ± 0.18 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ubxd8 | CB | Cerebellum | 53.9 | |
| 79.33 | | |||
| Ubxd8 | CTX | Cerebral cortex | 96.51 | |
| 78.48 | | |||
| Ubxd8 | HIP | Hippocampal region | 50.38 | |
| 81.46 | | |||
| Ubxd8 | HPF | Hippocampal formation | 54.54 | |
| 67.41 | | |||
| Ubxd8 | HY | Hypothalamus | 46.02 | |
| 38.84 | | |||
| Ubxd8 | LSX | Lateral septal complex | 74.92 | |
| 54.68 | | |||
| Ubxd8 | MB | Midbrain | 45.96 | |
| 42.16 | | |||
| Ubxd8 | MY | Medulla | 45.13 | |
| 50.39 | | |||
| Ubxd8 | OLF | Olfactory bulb | 72.19 | |
| 70.52 | | |||
| Ubxd8 | P | Pons | 44.25 | |
| 48.07 | | |||
| Ubxd8 | PAL | Pallidum | 36.69 | |
| 33.31 | | |||
| Ubxd8 | RHP | Retrohippocampal region | 62.9 | |
| 52.55 | | |||
| Ubxd8 | sAMY | Striatum-like amygdalar nuclei | 36.82 | |
| 27.62 | | |||
| Ubxd8 | STR | Striatum | 46.57 | |
| 34.14 | | |||
| Ubxd8 | STRd | Striatum dorsal region | 45.03 | |
| 32.99 | | |||
| Ubxd8 | STRv | Striatum ventral region | 47.68 | |
| 35.16 | | |||
| Ubxd8 | TH | Thalamus | 54.19 | |
| 45.39 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000408 | 19 | 150 | 168 | AHPVFYQGTYSQALNDAKR | Peptide Atlas |