AutismKB 2.0

Annotation Detail for ZC3H4


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Basic Information Top
Gene Symbol:ZC3H4 ( C19orf7,KIAA1064 )
Gene Full Name: zinc finger CCCH-type containing 4
Band: 19q13.33
Quick LinksEntrez ID:23211; OMIM: NA; Uniprot ID:ZC3H4_HUMAN; ENSEMBL ID: ENSG00000130749; HGNC ID: 17808
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst1 / 6231916
fetus9 / 56401215
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult28 / 193912114
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor5 / 13630236
kidney tumor0 / 689590 
leukemia5 / 9584252
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma4 / 7175555
non-neoplasia0 / 972500 
normal47 / 336030713
ovarian tumor4 / 7668252
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain7 / 11009896
cervix1 / 4817120
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye6 / 21105428
heart0 / 896260 
intestine5 / 23447221
kidney2 / 2117779
larynx0 / 241450 
liver2 / 2077439
lung3 / 3369748
lymph3 / 4427067
lymph node5 / 9161054
mammary gland4 / 15327126
mouth1 / 6705214
muscle0 / 1077150 
nerve2 / 15768126
ovary4 / 10205139
pancreas4 / 21481218
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate2 / 18934510
salivary gland2 / 2015599
skin0 / 2105740 
spleen0 / 539520 
stomach2 / 9661920
testis3 / 3304429
thymus2 / 8113124
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213390_at
Cell line Expression level Expression bar
721_B_lymphoblasts391.2
Adipocyte33.3
AdrenalCortex19.2
Adrenalgland48.05
Amygdala29.5
Appendix30.3
AtrioventricularNode26
BDCA4+_DentriticCells134.35
Bonemarrow103.05
BronchialEpithelialCells40.05
CD105+_Endothelial147.95
CD14+_Monocytes127.55
CD19+_BCells(neg._sel.)129.6
CD33+_Myeloid149.6
CD34+373.55
CD4+_Tcells214.7
CD56+_NKCells290.15
CD71+_EarlyErythroid48.05
CD8+_Tcells197.45
CardiacMyocytes44.1
Caudatenucleus28.5
Cerebellum112.15
CerebellumPeduncles110.8
CiliaryGanglion11.9
CingulateCortex67.5
Colorectaladenocarcinoma32.8
DorsalRootGanglion18.05
FetalThyroid87.3
Fetalbrain52.1
Fetalliver39.6
Fetallung24.95
GlobusPallidus24.35
Heart42.6
Hypothalamus42.85
Kidney31.25
Leukemia_chronicMyelogenousK-56254
Leukemia_promyelocytic-HL-6038.6
Leukemialymphoblastic(MOLT-4)60.8
Liver32.55
Lung178.4
Lymphnode53.2
Lymphoma_burkitts(Daudi)153.3
Lymphoma_burkitts(Raji)36.05
MedullaOblongata40.5
OccipitalLobe47.15
OlfactoryBulb48.85
Ovary15
Pancreas29.85
PancreaticIslet51.8
ParietalLobe36.1
Pituitary42.1
Placenta108.4
Pons25.25
PrefrontalCortex178.2
Prostate76.95
Salivarygland37.2
SkeletalMuscle29.45
Skin19.8
SmoothMuscle55.05
Spinalcord46.6
SubthalamicNucleus26.3
SuperiorCervicalGanglion29.15
TemporalLobe35.25
Testis119.65
TestisGermCell60.85
TestisIntersitial22.35
TestisLeydigCell26
TestisSeminiferousTubule34
Thalamus27.4
Thymus366.2
Thyroid40.05
Tongue35.4
Tonsil85.35
Trachea38.8
TrigeminalGanglion25.55
Uterus52.15
UterusCorpus21.95
WholeBlood236.3
Wholebrain70.35
colon107.05
pineal_day98.1
pineal_night64.52
retina96.825
small_intestine148.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P220618
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.1 ± 0.15
Basal Forebrain8.34 ± 0.18
Basal Part of Pons8.11 ± 0.26
Cerebellar Cortex8.51 ± 0.17
Cerebellar Nuclei8.35 ± 0.21
Claustrum8.41 ± 0.3
Epithalamus8.42 ± 0.22
Frontal Lobe8.19 ± 0.19
Globus Pallidus8.37 ± 0.22
Hypothalamus8.18 ± 0.24
Insula8.2 ± 0.23
Limbic Lobe8.28 ± 0.18
Mesencephalon8.34 ± 0.22
Myelencephalon8.29 ± 0.23
Occipital Lobe8.47 ± 0.2
Parietal Lobe8.28 ± 0.22
Pontine Tegmentum8.28 ± 0.19
Striatum8.34 ± 0.25
Subthalamus8.25 ± 0.13
Temporal Lobe8.24 ± 0.18
Thalamus8.32 ± 0.18
White Matter8.65 ± 0.05
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BC057627CBCerebellum14.4
17.07
BC057627CTXCerebral cortex13.64
9.33
BC057627HIPHippocampal region19.32
19.27
BC057627HPFHippocampal formation19.45
17.23
BC057627HYHypothalamus0.49
0.46
BC057627LSXLateral septal complex0.75
0.81
BC057627MBMidbrain1.66
1.76
BC057627MYMedulla3.77
3.54
BC057627OLFOlfactory bulb25.59
21.7
BC057627PPons2.08
2.53
BC057627PALPallidum1.64
1.68
BC057627RHPRetrohippocampal region20.09
14.73
BC057627sAMYStriatum-like amygdalar nuclei6.84
4.87
BC057627STRStriatum4.09
3.24
BC057627STRdStriatum dorsal region4.35
3.67
BC057627STRvStriatum ventral region2.82
1.82
BC057627THThalamus1.36
1.26
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010148 9 427 435 FYITGFCAR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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