AutismKB 2.0

Annotation Detail for RRP12


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Basic Information Top
Gene Symbol:RRP12 ( DKFZp762P1116,FLJ20231,KIAA0690 )
Gene Full Name: ribosomal RNA processing 12 homolog (S. cerevisiae)
Band: 10q24.1
Quick LinksEntrez ID:23223; OMIM: NA; Uniprot ID:RRP12_HUMAN; ENSEMBL ID: ENSG00000052749; HGNC ID: 29100
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst2 / 6231932
fetus21 / 56401237
neonate11 / 31097353
infant0 / 236200 
juvenile2 / 5555635
adult101 / 193912152
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor13 / 114246113
esophageal tumor1 / 1729057
gastrointestinal tumor10 / 11936983
germ cell tumor28 / 263845106
glioma4 / 10688337
head and neck tumor12 / 13630288
kidney tumor1 / 6895914
leukemia8 / 9584283
liver tumor5 / 9635951
lung tumor7 / 10312767
lymphoma11 / 71755153
non-neoplasia0 / 972500 
normal158 / 336030747
ovarian tumor5 / 7668265
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer3 / 10268029
retinoblastoma1 / 4635621
skin tumor31 / 124949248
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland1 / 3319730
ascites2 / 4001549
bladder0 / 297570 
blood9 / 12347872
bone5 / 7165569
bone marrow2 / 4880140
brain69 / 110098962
cervix1 / 4817120
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue10 / 21572246
esophagus1 / 2020949
eye7 / 21105433
heart1 / 8962611
intestine22 / 23447293
kidney8 / 21177737
larynx5 / 24145207
liver7 / 20774333
lung20 / 33697459
lymph11 / 44270248
lymph node0 / 916100 
mammary gland7 / 15327145
mouth9 / 67052134
muscle3 / 10771527
nerve0 / 157680 
ovary5 / 10205148
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta7 / 28082524
prostate5 / 18934526
salivary gland0 / 201550 
skin36 / 210574170
spleen2 / 5395237
stomach10 / 96619103
testis42 / 330442127
thymus2 / 8113124
thyroid0 / 474730 
tonsil1 / 1699958
trachea9 / 52413171
umbilical cord10 / 13680730
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 216360_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts13.05
Adipocyte7.35
AdrenalCortex7.45
Adrenalgland6.15
Amygdala9.4
Appendix7.05
AtrioventricularNode5.3
BDCA4+_DentriticCells7.75
Bonemarrow12.15
BronchialEpithelialCells14.4
CD105+_Endothelial7.85
CD14+_Monocytes7.35
CD19+_BCells(neg._sel.)7.35
CD33+_Myeloid49.8
CD34+9.65
CD4+_Tcells7.5
CD56+_NKCells9.3
CD71+_EarlyErythroid6.55
CD8+_Tcells6.65
CardiacMyocytes10.75
Caudatenucleus6.45
Cerebellum5.9
CerebellumPeduncles8.4
CiliaryGanglion4.9
CingulateCortex7.25
Colorectaladenocarcinoma22.3
DorsalRootGanglion5.4
FetalThyroid7.75
Fetalbrain7.7
Fetalliver6.4
Fetallung11.85
GlobusPallidus5.2
Heart9.45
Hypothalamus7.8
Kidney5.95
Leukemia_chronicMyelogenousK-5626.5
Leukemia_promyelocytic-HL-6015.5
Leukemialymphoblastic(MOLT-4)5.85
Liver20.05
Lung17.25
Lymphnode11.25
Lymphoma_burkitts(Daudi)9.15
Lymphoma_burkitts(Raji)15.4
MedullaOblongata7.15
OccipitalLobe6.45
OlfactoryBulb5.7
Ovary4.7
Pancreas10.9
PancreaticIslet13.5
ParietalLobe7.65
Pituitary8.2
Placenta7.2
Pons6.65
PrefrontalCortex9.45
Prostate10.45
Salivarygland5.7
SkeletalMuscle9.35
Skin5.3
SmoothMuscle8.8
Spinalcord7.4
SubthalamicNucleus6.35
SuperiorCervicalGanglion8.05
TemporalLobe6.45
Testis6.65
TestisGermCell5.9
TestisIntersitial5.75
TestisLeydigCell6.95
TestisSeminiferousTubule6.1
Thalamus7.25
Thymus5.8
Thyroid10.6
Tongue8.15
Tonsil7
Trachea5.95
TrigeminalGanglion7.55
Uterus12.65
UterusCorpus6.35
WholeBlood21.3
Wholebrain8.35
colon7.45
pineal_day8.6
pineal_night8.5
retina8.4
small_intestine6.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P24192
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.33 ± 0.29
Basal Forebrain6.09 ± 0.41
Basal Part of Pons6.77 ± 0.25
Cerebellar Cortex5.99 ± 0.25
Cerebellar Nuclei6.71 ± 0.2
Claustrum7 ± 0.48
Epithalamus5.86 ± 0.33
Frontal Lobe6.41 ± 0.45
Globus Pallidus6.32 ± 0.38
Hypothalamus6.14 ± 0.32
Insula6.21 ± 0.37
Limbic Lobe6.43 ± 0.45
Mesencephalon6.38 ± 0.53
Myelencephalon6.4 ± 0.42
Occipital Lobe6.54 ± 0.31
Parietal Lobe6.62 ± 0.39
Pontine Tegmentum6.39 ± 0.34
Striatum6.99 ± 0.29
Subthalamus6.26 ± 0.24
Temporal Lobe6.38 ± 0.31
Thalamus6.56 ± 0.34
White Matter5.32 ± 0.6
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
AA408556CBCerebellum0
0
AA408556CTXCerebral cortex0
0
AA408556HIPHippocampal region0
0
AA408556HPFHippocampal formation0
0
AA408556HYHypothalamus0
0
AA408556LSXLateral septal complex0
0
AA408556MBMidbrain0
0
AA408556MYMedulla0
0
AA408556OLFOlfactory bulb0
0
AA408556PPons0
0
AA408556PALPallidum0
0
AA408556RHPRetrohippocampal region0
0
AA408556sAMYStriatum-like amygdalar nuclei0
0
AA408556STRStriatum0
0
AA408556STRdStriatum dorsal region0
0
AA408556STRvStriatum ventral region0
0
AA408556THThalamus0
0
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009908 26 445 470 ECVAPHMADIGSVTSSASGPAQSVAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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