Annotation Detail for ATP11A
Basic Information Top
| Gene Symbol: | ATP11A ( ATPIH,ATPIS ) |
|---|---|
| Gene Full Name: | ATPase, class VI, type 11A |
| Band: | 13q34 |
| Quick Links | Entrez ID:23250; OMIM: 605868; Uniprot ID:AT11A_HUMAN; ENSEMBL ID: ENSG00000068650; HGNC ID: 13552 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.29189
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 7 / 62319 | 112 | |
| fetus | 37 / 564012 | 65 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 123 / 1939121 | 63 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 |  |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 18 / 119369 | 150 | |
| germ cell tumor | 12 / 263845 | 45 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 19 / 95842 | 198 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 5 / 103127 | 48 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 178 / 3360307 | 52 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 |  |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 9 / 40015 | 224 | |
| bladder | 1 / 29757 | 33 | |
| blood | 7 / 123478 | 56 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 62 / 1100989 | 56 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 11 / 211054 | 52 | |
| heart | 4 / 89626 | 44 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 60 / 336974 | 178 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 17 / 91610 | 185 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 6 / 67052 | 89 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 16 / 214812 | 74 | |
| parathyroid | 5 / 20539 | 243 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 19 / 280825 | 67 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 7 / 96619 | 72 | |
| testis | 15 / 330442 | 45 | |
| thymus | 9 / 81131 | 110 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 2 / 51780 | 38 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 216488_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 4.9 | |
| Adipocyte | 3.9 | |
| AdrenalCortex | 4.1 | |
| Adrenalgland | 3.3 | |
| Amygdala | 4.25 | |
| Appendix | 4 | |
| AtrioventricularNode | 3.1 | |
| BDCA4+_DentriticCells | 4.5 | |
| Bonemarrow | 3.95 | |
| BronchialEpithelialCells | 3.9 | |
| CD105+_Endothelial | 4 | |
| CD14+_Monocytes | 4.3 | |
| CD19+_BCells(neg._sel.) | 4.25 | |
| CD33+_Myeloid | 9.1 | |
| CD34+ | 5.15 | |
| CD4+_Tcells | 4.25 | |
| CD56+_NKCells | 4.75 | |
| CD71+_EarlyErythroid | 3.7 | |
| CD8+_Tcells | 3.8 | |
| CardiacMyocytes | 5.25 | |
| Caudatenucleus | 3.55 | |
| Cerebellum | 3.2 | |
| CerebellumPeduncles | 4.5 | |
| CiliaryGanglion | 2.9 | |
| CingulateCortex | 4.05 | |
| Colorectaladenocarcinoma | 4 | |
| DorsalRootGanglion | 3.05 | |
| FetalThyroid | 3.85 | |
| Fetalbrain | 3.95 | |
| Fetalliver | 3.45 | |
| Fetallung | 3.95 | |
| GlobusPallidus | 2.95 | |
| Heart | 4.95 | |
| Hypothalamus | 4.3 | |
| Kidney | 3.25 | |
| Leukemia_chronicMyelogenousK-562 | 3.6 | |
| Leukemia_promyelocytic-HL-60 | 3.5 | |
| Leukemialymphoblastic(MOLT-4) | 3.25 | |
| Liver | 5.3 | |
| Lung | 4.45 | |
| Lymphnode | 3.45 | |
| Lymphoma_burkitts(Daudi) | 5.05 | |
| Lymphoma_burkitts(Raji) | 5.65 | |
| MedullaOblongata | 3.65 | |
| OccipitalLobe | 3.55 | |
| OlfactoryBulb | 3.1 | |
| Ovary | 2.6 | |
| Pancreas | 3.2 | |
| PancreaticIslet | 4.25 | |
| ParietalLobe | 4.2 | |
| Pituitary | 4.65 | |
| Placenta | 4.2 | |
| Pons | 3.8 | |
| PrefrontalCortex | 5 | |
| Prostate | 4.65 | |
| Salivarygland | 3.15 | |
| SkeletalMuscle | 4.7 | |
| Skin | 3.1 | |
| SmoothMuscle | 4.5 | |
| Spinalcord | 4.25 | |
| SubthalamicNucleus | 3.55 | |
| SuperiorCervicalGanglion | 4.55 | |
| TemporalLobe | 3.65 | |
| Testis | 3.45 | |
| TestisGermCell | 3.4 | |
| TestisIntersitial | 4.9 | |
| TestisLeydigCell | 3.95 | |
| TestisSeminiferousTubule | 3.45 | |
| Thalamus | 4 | |
| Thymus | 3.1 | |
| Thyroid | 5.05 | |
| Tongue | 3.85 | |
| Tonsil | 3.85 | |
| Trachea | 3.3 | |
| TrigeminalGanglion | 4.05 | |
| Uterus | 3.25 | |
| UterusCorpus | 3.45 | |
| WholeBlood | 5.5 | |
| Wholebrain | 3.35 | |
| colon | 3.95 | |
| pineal_day | 4.96 | |
| pineal_night | 4.84 | |
| retina | 4.8 | |
| small_intestine | 3.85 | |
- Probe name: A_24_P143599
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.25 ± 0.5 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.56 ± 0.51 | |
| Basal Part of Pons | 5.33 ± 0.66 | |
| Cerebellar Cortex | 5.29 ± 0.29 | |
| Cerebellar Nuclei | 5.97 ± 0.45 | |
| Claustrum | 5.5 ± 0.41 | |
| Epithalamus | 5.33 ± 0.53 | |
| Frontal Lobe | 5.3 ± 0.52 | |
| Globus Pallidus | 6.51 ± 0.45 | |
| Hypothalamus | 5.07 ± 0.85 | |
| Insula | 4.94 ± 0.55 | |
| Limbic Lobe | 5.24 ± 0.61 | |
| Mesencephalon | 5.4 ± 0.69 | |
| Myelencephalon | 5.5 ± 0.6 | |
| Occipital Lobe | 5.88 ± 0.65 | |
| Parietal Lobe | 5.39 ± 0.51 | |
| Pontine Tegmentum | 5.51 ± 0.51 | |
| Striatum | 5.99 ± 0.47 | |
| Subthalamus | 5.84 ± 0.55 | |
| Temporal Lobe | 5.25 ± 0.49 | |
| Thalamus | 5.57 ± 0.48 | |
| White Matter | 7.82 ± 0.31 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Atp11a | CB | Cerebellum | 7.12 | |
| 8.38 | | |||
| Atp11a | CTX | Cerebral cortex | 3.85 | |
| 3.94 | | |||
| Atp11a | HIP | Hippocampal region | 6.28 | |
| 5.79 | | |||
| Atp11a | HPF | Hippocampal formation | 5.53 | |
| 4.91 | | |||
| Atp11a | HY | Hypothalamus | 4.67 | |
| 3.9 | | |||
| Atp11a | LSX | Lateral septal complex | 6.5 | |
| 4.73 | | |||
| Atp11a | MB | Midbrain | 7.31 | |
| 8.11 | | |||
| Atp11a | MY | Medulla | 15.52 | |
| 17.01 | | |||
| Atp11a | OLF | Olfactory bulb | 9.79 | |
| 8.19 | | |||
| Atp11a | P | Pons | 9.76 | |
| 9.86 | | |||
| Atp11a | PAL | Pallidum | 3.3 | |
| 2.72 | | |||
| Atp11a | RHP | Retrohippocampal region | 4.48 | |
| 3.84 | | |||
| Atp11a | sAMY | Striatum-like amygdalar nuclei | 2.44 | |
| 2.11 | | |||
| Atp11a | STR | Striatum | 7.21 | |
| 5.54 | | |||
| Atp11a | STRd | Striatum dorsal region | 5.52 | |
| 4.76 | | |||
| Atp11a | STRv | Striatum ventral region | 15.78 | |
| 9.84 | | |||
| Atp11a | TH | Thalamus | 15.2 | |
| 13.04 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00040748 | 19 | 119 | 137 | HKADNAMNQCPVHFIQHGK | Peptide Atlas |