AutismKB 2.0

Annotation Detail for MGA


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Basic Information Top
Gene Symbol:MGA ( FLJ12634,KIAA0518,MAD5,MXD5 )
Gene Full Name: MAX gene associated
Band: 15q15
Quick LinksEntrez ID:23269; OMIM: NA; Uniprot ID:MGAP_HUMAN; ENSEMBL ID: ENSG00000174197; HGNC ID: 14010
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst4 / 6231964
fetus31 / 56401254
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult61 / 193912131
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor3 / 3436687
chondrosarcoma1 / 8282312
colorectal tumor5 / 11424643
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor13 / 26384549
glioma2 / 10688318
head and neck tumor4 / 13630229
kidney tumor1 / 6895914
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma3 / 7175541
non-neoplasia2 / 9725020
normal105 / 336030731
ovarian tumor3 / 7668239
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone1 / 7165513
bone marrow2 / 4880140
brain24 / 110098921
cervix3 / 4817162
connective tissue4 / 14925526
ear1 / 1621261
embryonic tissue10 / 21572246
esophagus0 / 202090 
eye2 / 2110549
heart5 / 8962655
intestine6 / 23447225
kidney6 / 21177728
larynx1 / 2414541
liver10 / 20774348
lung10 / 33697429
lymph1 / 4427022
lymph node4 / 9161043
mammary gland7 / 15327145
mouth3 / 6705244
muscle1 / 1077159
nerve1 / 1576863
ovary4 / 10205139
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland4 / 16585241
placenta5 / 28082517
prostate4 / 18934521
salivary gland0 / 201550 
skin1 / 2105744
spleen2 / 5395237
stomach2 / 9661920
testis7 / 33044221
thymus3 / 8113136
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus14 / 23287860
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212945_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts18.4
Adipocyte9.05
AdrenalCortex11.75
Adrenalgland8.3
Amygdala10.55
Appendix9.5
AtrioventricularNode7.65
BDCA4+_DentriticCells11.15
Bonemarrow10.6
BronchialEpithelialCells9.05
CD105+_Endothelial10.05
CD14+_Monocytes10.7
CD19+_BCells(neg._sel.)23.7
CD33+_Myeloid12.2
CD34+20.95
CD4+_Tcells32
CD56+_NKCells12.1
CD71+_EarlyErythroid8.45
CD8+_Tcells35.5
CardiacMyocytes12.6
Caudatenucleus9.55
Cerebellum8.45
CerebellumPeduncles11.65
CiliaryGanglion7.15
CingulateCortex10
Colorectaladenocarcinoma9.8
DorsalRootGanglion7.3
FetalThyroid13.75
Fetalbrain10.3
Fetalliver8.55
Fetallung10.35
GlobusPallidus7.05
Heart13.05
Hypothalamus14.8
Kidney8.3
Leukemia_chronicMyelogenousK-56213.2
Leukemia_promyelocytic-HL-6014.1
Leukemialymphoblastic(MOLT-4)19.35
Liver12.75
Lung9.15
Lymphnode12.6
Lymphoma_burkitts(Daudi)13.15
Lymphoma_burkitts(Raji)14
MedullaOblongata9.75
OccipitalLobe9.7
OlfactoryBulb7.55
Ovary6.25
Pancreas8.05
PancreaticIslet10.3
ParietalLobe10.55
Pituitary17.55
Placenta10.45
Pons9.3
PrefrontalCortex14.2
Prostate11.8
Salivarygland7.85
SkeletalMuscle11.6
Skin7.45
SmoothMuscle10.4
Spinalcord10.65
SubthalamicNucleus8.2
SuperiorCervicalGanglion11.5
TemporalLobe9.25
Testis8.85
TestisGermCell9.8
TestisIntersitial8.5
TestisLeydigCell12.45
TestisSeminiferousTubule12.4
Thalamus11.35
Thymus8.6
Thyroid12.7
Tongue9.6
Tonsil10.65
Trachea8.85
TrigeminalGanglion9.8
Uterus9.7
UterusCorpus8.9
WholeBlood11.3
Wholebrain7.7
colon10.2
pineal_day17.86
pineal_night13.94
retina11.65
small_intestine9.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P255005
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.04 ± 1.08
Basal Forebrain2.78 ± 0.51
Basal Part of Pons2.95 ± 0.67
Cerebellar Cortex3.21 ± 0.41
Cerebellar Nuclei3.11 ± 0.66
Claustrum3.1 ± 0.9
Epithalamus2.09 ± 0.87
Frontal Lobe2.71 ± 0.73
Globus Pallidus2.64 ± 0.8
Hypothalamus2.65 ± 0.51
Insula2.41 ± 0.92
Limbic Lobe2.82 ± 0.63
Mesencephalon2.76 ± 0.71
Myelencephalon2.75 ± 0.67
Occipital Lobe2.81 ± 0.78
Parietal Lobe2.79 ± 0.68
Pontine Tegmentum2.72 ± 0.78
Striatum2.4 ± 0.88
Subthalamus2.44 ± 0.58
Temporal Lobe2.7 ± 0.76
Thalamus2.62 ± 0.69
White Matter2.88 ± 0.67
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
MgaCBCerebellum26.02
26.52
MgaCTXCerebral cortex23.68
16.75
MgaHIPHippocampal region17.49
22.75
MgaHPFHippocampal formation13.68
15.71
MgaHYHypothalamus5.17
3.72
MgaLSXLateral septal complex9.11
6.38
MgaMBMidbrain5.77
4.86
MgaMYMedulla11.17
11.09
MgaOLFOlfactory bulb25.03
19.76
MgaPPons5.82
5.19
MgaPALPallidum5.15
4.02
MgaRHPRetrohippocampal region6.78
5.5
MgasAMYStriatum-like amygdalar nuclei2.23
1.48
MgaSTRStriatum10.52
7.86
MgaSTRdStriatum dorsal region11.41
8.75
MgaSTRvStriatum ventral region12.45
8.68
MgaTHThalamus6.52
5.67
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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