AutismKB 2.0

Annotation Detail for CLEC16A


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Basic Information Top
Gene Symbol:CLEC16A ( Gop-1,KIAA0350,MGC111457 )
Gene Full Name: C-type lectin domain family 16, member A
Band: 16p13.13
Quick LinksEntrez ID:23274; OMIM: 611303; Uniprot ID:CL16A_HUMAN; ENSEMBL ID: ENSG00000038532; HGNC ID: 29013
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst3 / 6231948
fetus35 / 56401262
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult86 / 193912144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor8 / 9417884
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor10 / 26384537
glioma6 / 10688356
head and neck tumor5 / 13630236
kidney tumor2 / 6895929
leukemia8 / 9584283
liver tumor0 / 963590 
lung tumor3 / 10312729
lymphoma8 / 71755111
non-neoplasia3 / 9725030
normal168 / 336030749
ovarian tumor0 / 766820 
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor7 / 12494956
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites2 / 4001549
bladder0 / 297570 
blood8 / 12347864
bone2 / 7165527
bone marrow3 / 4880161
brain67 / 110098960
cervix0 / 481710 
connective tissue3 / 14925520
ear1 / 1621261
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye8 / 21105437
heart1 / 8962611
intestine6 / 23447225
kidney10 / 21177747
larynx1 / 2414541
liver2 / 2077439
lung9 / 33697426
lymph6 / 44270135
lymph node7 / 9161076
mammary gland10 / 15327165
mouth3 / 6705244
muscle4 / 10771537
nerve0 / 157680 
ovary0 / 1020510 
pancreas11 / 21481251
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta11 / 28082539
prostate6 / 18934531
salivary gland0 / 201550 
skin9 / 21057442
spleen3 / 5395255
stomach2 / 9661920
testis75 / 330442226
thymus17 / 81131209
thyroid1 / 4747321
tonsil2 / 16999117
trachea1 / 5241319
umbilical cord0 / 136800 
uterus12 / 23287851
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212786_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.05
Adipocyte4.1
AdrenalCortex4.25
Adrenalgland3.5
Amygdala4.45
Appendix4.05
AtrioventricularNode3.1
BDCA4+_DentriticCells15.35
Bonemarrow4.05
BronchialEpithelialCells4.1
CD105+_Endothelial4.25
CD14+_Monocytes4.75
CD19+_BCells(neg._sel.)23.7
CD33+_Myeloid11.5
CD34+7.35
CD4+_Tcells4.65
CD56+_NKCells20.7
CD71+_EarlyErythroid5.85
CD8+_Tcells5.1
CardiacMyocytes5.2
Caudatenucleus3.75
Cerebellum4.35
CerebellumPeduncles4.8
CiliaryGanglion2.85
CingulateCortex4.3
Colorectaladenocarcinoma5.25
DorsalRootGanglion3.1
FetalThyroid4.05
Fetalbrain4.6
Fetalliver3.45
Fetallung3.55
GlobusPallidus3
Heart5.25
Hypothalamus4.85
Kidney3.3
Leukemia_chronicMyelogenousK-5623.7
Leukemia_promyelocytic-HL-608.5
Leukemialymphoblastic(MOLT-4)3.8
Liver5.45
Lung5.15
Lymphnode3.6
Lymphoma_burkitts(Daudi)5.35
Lymphoma_burkitts(Raji)55.45
MedullaOblongata4.15
OccipitalLobe3.8
OlfactoryBulb3.25
Ovary2.75
Pancreas3.25
PancreaticIslet4.35
ParietalLobe4.35
Pituitary4.9
Placenta4.4
Pons3.95
PrefrontalCortex11.65
Prostate8.9
Salivarygland3.25
SkeletalMuscle4.65
Skin3.1
SmoothMuscle4.7
Spinalcord4.65
SubthalamicNucleus3.7
SuperiorCervicalGanglion4.55
TemporalLobe3.8
Testis9.85
TestisGermCell8.25
TestisIntersitial4.75
TestisLeydigCell4.15
TestisSeminiferousTubule3.6
Thalamus4.6
Thymus3.75
Thyroid6.2
Tongue4
Tonsil4
Trachea3.45
TrigeminalGanglion3.95
Uterus3.45
UterusCorpus3.7
WholeBlood4.65
Wholebrain8.95
colon4.25
pineal_day21.7
pineal_night10.12
retina5
small_intestine4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P194246
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.07 ± 0.31
Basal Forebrain8.16 ± 0.19
Basal Part of Pons8.44 ± 0.29
Cerebellar Cortex8.58 ± 0.24
Cerebellar Nuclei8.3 ± 0.31
Claustrum8.03 ± 0.34
Epithalamus8.19 ± 0.41
Frontal Lobe8.36 ± 0.27
Globus Pallidus8.14 ± 0.15
Hypothalamus7.88 ± 0.18
Insula8.33 ± 0.12
Limbic Lobe8.33 ± 0.3
Mesencephalon8.27 ± 0.32
Myelencephalon8.33 ± 0.31
Occipital Lobe8.64 ± 0.28
Parietal Lobe8.47 ± 0.26
Pontine Tegmentum8.29 ± 0.27
Striatum8.06 ± 0.19
Subthalamus8.52 ± 0.03
Temporal Lobe8.36 ± 0.2
Thalamus8.45 ± 0.29
White Matter7.75 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
4932416N17RikCBCerebellum12.62
16.5
4932416N17RikCTXCerebral cortex2.91
3.63
4932416N17RikHIPHippocampal region3.12
3.62
4932416N17RikHPFHippocampal formation2.4
2.61
4932416N17RikHYHypothalamus0.22
0.17
4932416N17RikLSXLateral septal complex0.14
0.17
4932416N17RikMBMidbrain0.74
0.96
4932416N17RikMYMedulla2.86
2.98
4932416N17RikOLFOlfactory bulb2.9
2.42
4932416N17RikPPons0.61
0.74
4932416N17RikPALPallidum0.33
0.45
4932416N17RikRHPRetrohippocampal region1.23
1.14
4932416N17RiksAMYStriatum-like amygdalar nuclei1.46
1.63
4932416N17RikSTRStriatum0.58
0.59
4932416N17RikSTRdStriatum dorsal region0.55
0.51
4932416N17RikSTRvStriatum ventral region0.23
0.18
4932416N17RikTHThalamus1.14
1.47
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00036633 22 395 416 NVGEEEDEEKGPTEDAQEDAEK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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