AutismKB 2.0

Annotation Detail for CSTF2T


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Basic Information Top
Gene Symbol:CSTF2T ( CstF-64T,DKFZp434C1013,KIAA0689 )
Gene Full Name: cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
Band: 10q21.1
Quick LinksEntrez ID:23283; OMIM: 611968; Uniprot ID:CSTFT_HUMAN; ENSEMBL ID: ENSG00000177613; HGNC ID: 17086
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus38 / 56401267
neonate1 / 3109732
infant1 / 2362042
juvenile5 / 5555689
adult55 / 193912128
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor3 / 3436687
chondrosarcoma1 / 8282312
colorectal tumor8 / 11424670
esophageal tumor1 / 1729057
gastrointestinal tumor3 / 11936925
germ cell tumor4 / 26384515
glioma3 / 10688328
head and neck tumor3 / 13630222
kidney tumor2 / 6895929
leukemia3 / 9584231
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma3 / 7175541
non-neoplasia2 / 9725020
normal155 / 336030746
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma2 / 4635643
skin tumor4 / 12494932
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder1 / 2975733
blood4 / 12347832
bone2 / 7165527
bone marrow1 / 4880120
brain82 / 110098974
cervix3 / 4817162
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus1 / 2020949
eye7 / 21105433
heart4 / 8962644
intestine12 / 23447251
kidney11 / 21177751
larynx0 / 241450 
liver4 / 20774319
lung5 / 33697414
lymph0 / 442700 
lymph node2 / 9161021
mammary gland4 / 15327126
mouth3 / 6705244
muscle0 / 1077150 
nerve0 / 157680 
ovary4 / 10205139
pancreas5 / 21481223
parathyroid3 / 20539146
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta6 / 28082521
prostate3 / 18934515
salivary gland0 / 201550 
skin5 / 21057423
spleen7 / 53952129
stomach4 / 9661941
testis5 / 33044215
thymus8 / 8113198
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus10 / 23287842
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212901_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts14.25
Adipocyte8.95
AdrenalCortex10
Adrenalgland7.8
Amygdala9.6
Appendix8.65
AtrioventricularNode7.25
BDCA4+_DentriticCells9.7
Bonemarrow9.5
BronchialEpithelialCells7.9
CD105+_Endothelial12.85
CD14+_Monocytes9.65
CD19+_BCells(neg._sel.)12.35
CD33+_Myeloid10.9
CD34+13.65
CD4+_Tcells10
CD56+_NKCells11.9
CD71+_EarlyErythroid14.35
CD8+_Tcells11.5
CardiacMyocytes12
Caudatenucleus14.5
Cerebellum7.5
CerebellumPeduncles10.3
CiliaryGanglion6.75
CingulateCortex9.35
Colorectaladenocarcinoma8.7
DorsalRootGanglion7.75
FetalThyroid8.85
Fetalbrain8.95
Fetalliver8.15
Fetallung7.45
GlobusPallidus7
Heart12.45
Hypothalamus10
Kidney7.6
Leukemia_chronicMyelogenousK-5628.25
Leukemia_promyelocytic-HL-6010.3
Leukemialymphoblastic(MOLT-4)8.9
Liver12.3
Lung9.9
Lymphnode7.7
Lymphoma_burkitts(Daudi)15.6
Lymphoma_burkitts(Raji)12.05
MedullaOblongata8.05
OccipitalLobe8.15
OlfactoryBulb6.75
Ovary6.15
Pancreas7.4
PancreaticIslet9.8
ParietalLobe9.85
Pituitary10.75
Placenta8.5
Pons8.8
PrefrontalCortex11.9
Prostate10.35
Salivarygland7.3
SkeletalMuscle11.35
Skin7.3
SmoothMuscle9.8
Spinalcord11.1
SubthalamicNucleus8.45
SuperiorCervicalGanglion11.2
TemporalLobe8.65
Testis7.8
TestisGermCell6.65
TestisIntersitial7.4
TestisLeydigCell8.95
TestisSeminiferousTubule7.55
Thalamus12.8
Thymus7.05
Thyroid11
Tongue8.95
Tonsil8.1
Trachea9.9
TrigeminalGanglion9.45
Uterus6.95
UterusCorpus7.9
WholeBlood8.95
Wholebrain8.15
colon9.25
pineal_day10.9
pineal_night10.78
retina15.225
small_intestine8.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P12730
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.61 ± 0.47
Basal Forebrain5.57 ± 0.43
Basal Part of Pons5.53 ± 0.37
Cerebellar Cortex5.48 ± 0.45
Cerebellar Nuclei6.04 ± 0.35
Claustrum5.34 ± 0.56
Epithalamus5.42 ± 0.41
Frontal Lobe5.52 ± 0.41
Globus Pallidus5.9 ± 0.33
Hypothalamus5.39 ± 0.28
Insula5.52 ± 0.47
Limbic Lobe5.59 ± 0.45
Mesencephalon5.43 ± 0.45
Myelencephalon5.6 ± 0.44
Occipital Lobe5.78 ± 0.39
Parietal Lobe5.6 ± 0.45
Pontine Tegmentum5.58 ± 0.51
Striatum5.39 ± 0.38
Subthalamus6.5 ± 1
Temporal Lobe5.53 ± 0.45
Thalamus5.51 ± 0.41
White Matter6.97 ± 0.3
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cstf2tCBCerebellum0.39
0.44
Cstf2tCTXCerebral cortex1.09
1.03
Cstf2tHIPHippocampal region12.08
12.69
Cstf2tHPFHippocampal formation7.39
7.18
Cstf2tHYHypothalamus0.03
0.02
Cstf2tLSXLateral septal complex0.36
0.25
Cstf2tMBMidbrain0.09
0.13
Cstf2tMYMedulla0.12
0.24
Cstf2tOLFOlfactory bulb1.89
1.94
Cstf2tPPons0.07
0.16
Cstf2tPALPallidum0
0
Cstf2tRHPRetrohippocampal region1.13
0.89
Cstf2tsAMYStriatum-like amygdalar nuclei0.13
0.06
Cstf2tSTRStriatum0.13
0.11
Cstf2tSTRdStriatum dorsal region0.03
0.07
Cstf2tSTRvStriatum ventral region0.36
0.23
Cstf2tTHThalamus0.26
0.29
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00003205 18 58 75 GYGFCEYQDQETALSAMR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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