AutismKB 2.0

Annotation Detail for ATMIN


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Basic Information Top
Gene Symbol:ATMIN ( ASCIZ,DKFZp779K1455,FLJ50270,FLJ61620,FLJ76795,KIAA0431,ZNF822 )
Gene Full Name: ATM interactor
Band: 16q23.2
Quick LinksEntrez ID:23300; OMIM: NA; Uniprot ID:ATMIN_HUMAN; ENSEMBL ID: ENSG00000166454; HGNC ID: 29034
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus37 / 56401265
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult129 / 193912166
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult3 / 19391211
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor7 / 34366203
chondrosarcoma7 / 8282384
colorectal tumor2 / 11424617
esophageal tumor1 / 1729057
gastrointestinal tumor18 / 119369150
germ cell tumor21 / 26384579
glioma3 / 10688328
head and neck tumor7 / 13630251
kidney tumor5 / 6895972
leukemia4 / 9584241
liver tumor5 / 9635951
lung tumor6 / 10312758
lymphoma1 / 7175513
non-neoplasia6 / 9725061
normal204 / 336030760
ovarian tumor4 / 7668252
pancreatic tumor11 / 104616105
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer9 / 10268087
retinoblastoma0 / 463560 
skin tumor4 / 12494932
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor29 / 90257321
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal2 / 33603070 
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland4 / 33197120
ascites5 / 40015124
bladder1 / 2975733
blood2 / 12347816
bone1 / 7165513
bone marrow2 / 4880140
brain48 / 110098943
cervix7 / 48171145
connective tissue8 / 14925553
ear1 / 1621261
embryonic tissue8 / 21572237
esophagus1 / 2020949
eye15 / 21105471
heart8 / 8962689
intestine11 / 23447246
kidney18 / 21177784
larynx3 / 24145124
liver6 / 20774328
lung28 / 33697483
lymph0 / 442700 
lymph node15 / 91610163
mammary gland8 / 15327152
mouth2 / 6705229
muscle5 / 10771546
nerve2 / 15768126
ovary4 / 10205139
pancreas15 / 21481269
parathyroid4 / 20539194
pharynx2 / 4132848
pituitary gland1 / 1658560
placenta17 / 28082560
prostate14 / 18934573
salivary gland0 / 201550 
skin8 / 21057437
spleen3 / 5395255
stomach5 / 9661951
testis30 / 33044290
thymus2 / 8113124
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus35 / 232878150
vascular2 / 5178038
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201854_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts95.6
Adipocyte30.8
AdrenalCortex35.85
Adrenalgland20.45
Amygdala53.1
Appendix24.15
AtrioventricularNode25.75
BDCA4+_DentriticCells108.05
Bonemarrow7.85
BronchialEpithelialCells74.4
CD105+_Endothelial25.25
CD14+_Monocytes60.7
CD19+_BCells(neg._sel.)104.85
CD33+_Myeloid56.4
CD34+35.05
CD4+_Tcells61.3
CD56+_NKCells175.85
CD71+_EarlyErythroid28.8
CD8+_Tcells67.95
CardiacMyocytes20.7
Caudatenucleus32
Cerebellum18.15
CerebellumPeduncles18.6
CiliaryGanglion21.35
CingulateCortex36.65
Colorectaladenocarcinoma16.8
DorsalRootGanglion13.1
FetalThyroid17.5
Fetalbrain44.85
Fetalliver15.45
Fetallung19.9
GlobusPallidus18.9
Heart10.75
Hypothalamus46.35
Kidney14.25
Leukemia_chronicMyelogenousK-56230.4
Leukemia_promyelocytic-HL-6015.4
Leukemialymphoblastic(MOLT-4)24.85
Liver10.7
Lung12.5
Lymphnode15.25
Lymphoma_burkitts(Daudi)31.85
Lymphoma_burkitts(Raji)12.4
MedullaOblongata29.45
OccipitalLobe58.75
OlfactoryBulb24.2
Ovary20.05
Pancreas17.85
PancreaticIslet35.05
ParietalLobe60.45
Pituitary53.15
Placenta78.8
Pons25
PrefrontalCortex56.35
Prostate46.55
Salivarygland8.25
SkeletalMuscle40.1
Skin7.55
SmoothMuscle37.7
Spinalcord24.6
SubthalamicNucleus38.2
SuperiorCervicalGanglion16
TemporalLobe29.7
Testis222.65
TestisGermCell168.85
TestisIntersitial208.15
TestisLeydigCell136.35
TestisSeminiferousTubule131
Thalamus31.45
Thymus25.05
Thyroid22.7
Tongue33.05
Tonsil29.6
Trachea21.9
TrigeminalGanglion17.6
Uterus18.15
UterusCorpus24.2
WholeBlood24.25
Wholebrain36.05
colon23.8
pineal_day78.78
pineal_night100.98
retina46.625
small_intestine13
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_3430_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.57 ± 0.45
Basal Forebrain6.64 ± 0.18
Basal Part of Pons6.75 ± 0.24
Cerebellar Cortex6.53 ± 0.28
Cerebellar Nuclei6.71 ± 0.26
Claustrum6.62 ± 0.4
Epithalamus6.46 ± 0.43
Frontal Lobe6.63 ± 0.32
Globus Pallidus6.43 ± 0.36
Hypothalamus6.82 ± 0.22
Insula6.64 ± 0.21
Limbic Lobe6.7 ± 0.29
Mesencephalon6.57 ± 0.41
Myelencephalon6.61 ± 0.34
Occipital Lobe6.71 ± 0.29
Parietal Lobe6.67 ± 0.33
Pontine Tegmentum6.61 ± 0.32
Striatum6.5 ± 0.34
Subthalamus6.46 ± 0.38
Temporal Lobe6.63 ± 0.31
Thalamus6.58 ± 0.29
White Matter6.53 ± 0.25
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BC060631CBCerebellum4.89
6.47
BC060631CTXCerebral cortex24.02
17.54
BC060631HIPHippocampal region8.03
7.44
BC060631HPFHippocampal formation9.66
8.01
BC060631HYHypothalamus12.75
10.04
BC060631LSXLateral septal complex1.63
1.17
BC060631MBMidbrain17.71
16.56
BC060631MYMedulla30.78
39.42
BC060631OLFOlfactory bulb7.83
5.42
BC060631PPons24.79
29.08
BC060631PALPallidum15.76
15.79
BC060631RHPRetrohippocampal region13.01
9.27
BC060631sAMYStriatum-like amygdalar nuclei21.55
14.86
BC060631STRStriatum6.66
4.68
BC060631STRdStriatum dorsal region4.96
3.53
BC060631STRvStriatum ventral region6.28
4.23
BC060631THThalamus5.31
4.32
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
ATMIN_HUMAN_91 8 91 98 LNNQPIPR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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