AutismKB 2.0

Annotation Detail for NCAPD3


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Basic Information Top
Gene Symbol:NCAPD3 ( CAP-D3,FLJ42888,KIAA0056,MGC104671,hCAP-D3,hHCP-6,hcp-6 )
Gene Full Name: non-SMC condensin II complex, subunit D3
Band: 11q25
Quick LinksEntrez ID:23310; OMIM: 609276; Uniprot ID:CNDD3_HUMAN; ENSEMBL ID: ENSG00000151503; HGNC ID: 28952
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst5 / 6231980
fetus15 / 56401226
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult107 / 193912155
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor6 / 9417863
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor11 / 26384541
glioma0 / 1068830 
head and neck tumor4 / 13630229
kidney tumor1 / 6895914
leukemia6 / 9584262
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma7 / 7175597
non-neoplasia0 / 972500 
normal100 / 336030729
ovarian tumor6 / 7668278
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer38 / 102680370
retinoblastoma3 / 4635664
skin tumor3 / 12494924
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood5 / 12347840
bone7 / 7165597
bone marrow2 / 4880140
brain14 / 110098912
cervix3 / 4817162
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye5 / 21105423
heart3 / 8962633
intestine9 / 23447238
kidney4 / 21177718
larynx0 / 241450 
liver5 / 20774324
lung1 / 3369742
lymph3 / 4427067
lymph node9 / 9161098
mammary gland7 / 15327145
mouth4 / 6705259
muscle4 / 10771537
nerve0 / 157680 
ovary6 / 10205158
pancreas1 / 2148124
parathyroid4 / 20539194
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta12 / 28082542
prostate43 / 189345227
salivary gland1 / 2015549
skin5 / 21057423
spleen0 / 539520 
stomach5 / 9661951
testis14 / 33044242
thymus4 / 8113149
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus9 / 23287838
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212789_at
Cell line Expression level Expression bar
721_B_lymphoblasts198.15
Adipocyte9.4
AdrenalCortex9.3
Adrenalgland7.9
Amygdala9.7
Appendix9.1
AtrioventricularNode8.35
BDCA4+_DentriticCells22.5
Bonemarrow27.45
BronchialEpithelialCells16.85
CD105+_Endothelial110.75
CD14+_Monocytes10.1
CD19+_BCells(neg._sel.)11.45
CD33+_Myeloid26.85
CD34+106.95
CD4+_Tcells24.85
CD56+_NKCells28.05
CD71+_EarlyErythroid128.05
CD8+_Tcells25.65
CardiacMyocytes18.25
Caudatenucleus8.4
Cerebellum8.1
CerebellumPeduncles10.75
CiliaryGanglion6.45
CingulateCortex9.2
Colorectaladenocarcinoma70.05
DorsalRootGanglion6.7
FetalThyroid8.9
Fetalbrain9.15
Fetalliver18.75
Fetallung8.75
GlobusPallidus6.95
Heart13.7
Hypothalamus10.4
Kidney7.7
Leukemia_chronicMyelogenousK-56233.15
Leukemia_promyelocytic-HL-6064.2
Leukemialymphoblastic(MOLT-4)135.25
Liver12.45
Lung10.55
Lymphnode10.95
Lymphoma_burkitts(Daudi)119.8
Lymphoma_burkitts(Raji)17.1
MedullaOblongata7.8
OccipitalLobe8
OlfactoryBulb7.6
Ovary6.7
Pancreas7.6
PancreaticIslet10.1
ParietalLobe9.75
Pituitary11.35
Placenta8.6
Pons8.85
PrefrontalCortex9.1
Prostate257.15
Salivarygland7
SkeletalMuscle10.75
Skin6.95
SmoothMuscle10.65
Spinalcord9.8
SubthalamicNucleus8.4
SuperiorCervicalGanglion10.7
TemporalLobe8
Testis13.15
TestisGermCell13.65
TestisIntersitial12.85
TestisLeydigCell9.5
TestisSeminiferousTubule8.35
Thalamus9.5
Thymus52.55
Thyroid16.85
Tongue9.2
Tonsil9.25
Trachea7.75
TrigeminalGanglion9.3
Uterus7.8
UterusCorpus10.95
WholeBlood10.15
Wholebrain8.5
colon9.8
pineal_day11.86
pineal_night10.9
retina10.9
small_intestine14.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11230_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.46 ± 0.95
Basal Forebrain2.9 ± 0.64
Basal Part of Pons2.94 ± 0.41
Cerebellar Cortex3.35 ± 0.65
Cerebellar Nuclei3.29 ± 0.66
Claustrum3.73 ± 0.64
Epithalamus3.2 ± 0.72
Frontal Lobe3.11 ± 0.65
Globus Pallidus3.27 ± 0.66
Hypothalamus3.28 ± 0.6
Insula3 ± 0.77
Limbic Lobe3.19 ± 0.69
Mesencephalon3.33 ± 0.69
Myelencephalon3.2 ± 0.67
Occipital Lobe3.2 ± 0.92
Parietal Lobe3.26 ± 0.77
Pontine Tegmentum3.22 ± 0.92
Striatum2.99 ± 0.71
Subthalamus3.37 ± 0.56
Temporal Lobe3.17 ± 0.72
Thalamus3.06 ± 0.68
White Matter3.66 ± 0.33
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
B130055D15RikCBCerebellum27.88
33.54
B130055D15RikCTXCerebral cortex32.05
20.41
B130055D15RikHIPHippocampal region29.05
35.29
B130055D15RikHPFHippocampal formation27.86
27.71
B130055D15RikHYHypothalamus4.51
3.07
B130055D15RikLSXLateral septal complex6.39
4.08
B130055D15RikMBMidbrain17.26
13.51
B130055D15RikMYMedulla14.65
12.71
B130055D15RikOLFOlfactory bulb26.01
18.92
B130055D15RikPPons14.32
12.01
B130055D15RikPALPallidum7.79
5.51
B130055D15RikRHPRetrohippocampal region25.9
17.72
B130055D15RiksAMYStriatum-like amygdalar nuclei5.72
4.04
B130055D15RikSTRStriatum9.69
6.38
B130055D15RikSTRdStriatum dorsal region10.09
6.77
B130055D15RikSTRvStriatum ventral region11.59
7
B130055D15RikTHThalamus34.24
24.62
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CNDD3_HUMAN_1329 20 1329 1348 ASAGHVAVSSPTPETGPLQR PRIDE
CNDD3_HUMAN_1381 16 1381 1396 SLGVLPFTLNSGSPEK PRIDE
PAp00011644 23 1388 1410 TCSQVSSYSLEQESNGEIEHVTK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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