Annotation Detail for SATB2
Basic Information Top
| Gene Symbol: | SATB2 ( FLJ21474,FLJ32076,KIAA1034,MGC119474,MGC119477 ) |
|---|---|
| Gene Full Name: | SATB homeobox 2 |
| Band: | 2q33.1 |
| Quick Links | Entrez ID:23314; OMIM: 608148; Uniprot ID:SATB2_HUMAN; ENSEMBL ID: ENSG00000119042; HGNC ID: 21637 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.516617
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 37 / 564012 | 65 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 25 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 9 / 96359 | 93 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 80 / 3360307 | 23 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 47 / 1100989 | 42 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 10 / 207743 | 48 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 213435_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 4.95 | |
| Adipocyte | 4 | |
| AdrenalCortex | 4.35 | |
| Adrenalgland | 3.4 | |
| Amygdala | 4.75 | |
| Appendix | 4.05 | |
| AtrioventricularNode | 3.15 | |
| BDCA4+_DentriticCells | 4.45 | |
| Bonemarrow | 3.9 | |
| BronchialEpithelialCells | 3.95 | |
| CD105+_Endothelial | 4.1 | |
| CD14+_Monocytes | 4.3 | |
| CD19+_BCells(neg._sel.) | 4.25 | |
| CD33+_Myeloid | 6.85 | |
| CD34+ | 5.45 | |
| CD4+_Tcells | 4.35 | |
| CD56+_NKCells | 4.8 | |
| CD71+_EarlyErythroid | 3.75 | |
| CD8+_Tcells | 3.85 | |
| CardiacMyocytes | 5.15 | |
| Caudatenucleus | 3.6 | |
| Cerebellum | 3.25 | |
| CerebellumPeduncles | 4.55 | |
| CiliaryGanglion | 2.9 | |
| CingulateCortex | 33 | |
| Colorectaladenocarcinoma | 4.1 | |
| DorsalRootGanglion | 3.1 | |
| FetalThyroid | 3.9 | |
| Fetalbrain | 1341.75 |  |
| Fetalliver | 3.45 | |
| Fetallung | 3.3 | |
| GlobusPallidus | 16.3 | |
| Heart | 5.1 | |
| Hypothalamus | 4.35 | |
| Kidney | 3.25 | |
| Leukemia_chronicMyelogenousK-562 | 34.05 | |
| Leukemia_promyelocytic-HL-60 | 3.55 | |
| Leukemialymphoblastic(MOLT-4) | 3.25 | |
| Liver | 5.3 | |
| Lung | 4.4 | |
| Lymphnode | 3.4 | |
| Lymphoma_burkitts(Daudi) | 5.15 | |
| Lymphoma_burkitts(Raji) | 5.65 | |
| MedullaOblongata | 25.05 | |
| OccipitalLobe | 52.8 | |
| OlfactoryBulb | 3.2 | |
| Ovary | 2.7 | |
| Pancreas | 3.2 | |
| PancreaticIslet | 4.25 | |
| ParietalLobe | 13.5 | |
| Pituitary | 4.65 | |
| Placenta | 4.15 | |
| Pons | 5.25 | |
| PrefrontalCortex | 205.4 |  |
| Prostate | 4.65 | |
| Salivarygland | 3.55 | |
| SkeletalMuscle | 4.65 | |
| Skin | 3.1 | |
| SmoothMuscle | 4.55 | |
| Spinalcord | 4.3 | |
| SubthalamicNucleus | 38.25 | |
| SuperiorCervicalGanglion | 4.65 | |
| TemporalLobe | 22.9 | |
| Testis | 3.5 | |
| TestisGermCell | 3.35 | |
| TestisIntersitial | 3.4 | |
| TestisLeydigCell | 4 | |
| TestisSeminiferousTubule | 3.45 | |
| Thalamus | 4.1 | |
| Thymus | 3.15 | |
| Thyroid | 5.05 | |
| Tongue | 4 | |
| Tonsil | 3.9 | |
| Trachea | 3.35 | |
| TrigeminalGanglion | 4.05 | |
| Uterus | 3.25 | |
| UterusCorpus | 3.65 | |
| WholeBlood | 4.4 | |
| Wholebrain | 100.8 | |
| colon | 214.85 | |
| pineal_day | 5.04 | |
| pineal_night | 4.92 | |
| retina | 4.85 | |
| small_intestine | 3.85 | |
- Probe name: CUST_4775_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.81 ± 0.85 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.58 ± 0.62 | |
| Basal Part of Pons | 5.82 ± 0.73 | |
| Cerebellar Cortex | 4.88 ± 0.6 | |
| Cerebellar Nuclei | 5.1 ± 0.71 | |
| Claustrum | 7.66 ± 0.63 | |
| Epithalamus | 5.54 ± 0.67 | |
| Frontal Lobe | 6.01 ± 0.71 | |
| Globus Pallidus | 4.5 ± 1.92 | |
| Hypothalamus | 5.17 ± 0.44 | |
| Insula | 6.29 ± 0.56 | |
| Limbic Lobe | 5.99 ± 1.02 | |
| Mesencephalon | 5.83 ± 0.89 | |
| Myelencephalon | 5.88 ± 0.9 | |
| Occipital Lobe | 6.43 ± 0.54 | |
| Parietal Lobe | 6.52 ± 0.72 | |
| Pontine Tegmentum | 5.9 ± 0.86 | |
| Striatum | 4.99 ± 1.6 | |
| Subthalamus | 4.97 ± 0.78 | |
| Temporal Lobe | 6.19 ± 0.61 | |
| Thalamus | 5.94 ± 0.66 | |
| White Matter | 5.74 ± 0.6 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Satb2 | CB | Cerebellum | 10.92 | |
| 14.56 | | |||
| Satb2 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Satb2 | HIP | Hippocampal region | 18.04 | |
| 29.5 | | |||
| Satb2 | HPF | Hippocampal formation | 42.95 | |
| 54.09 | | |||
| Satb2 | HY | Hypothalamus | 5.49 | |
| 4.28 | | |||
| Satb2 | LSX | Lateral septal complex | 2.52 | |
| 2.57 | | |||
| Satb2 | MB | Midbrain | 5.41 | |
| 6.17 | | |||
| Satb2 | MY | Medulla | 7.15 | |
| 7.97 | | |||
| Satb2 | OLF | Olfactory bulb | 20.06 | |
| 17.45 | | |||
| Satb2 | P | Pons | 5.85 | |
| 6.04 | | |||
| Satb2 | PAL | Pallidum | 5.07 | |
| 4.83 | | |||
| Satb2 | RHP | Retrohippocampal region | 77.69 | |
| 79.23 | | |||
| Satb2 | sAMY | Striatum-like amygdalar nuclei | 8.41 | |
| 6.54 | | |||
| Satb2 | STR | Striatum | 7.46 | |
| 8.58 | | |||
| Satb2 | STRd | Striatum dorsal region | 8.25 | |
| 10.6 | | |||
| Satb2 | STRv | Striatum ventral region | 5.36 | |
| 4.76 | | |||
| Satb2 | TH | Thalamus | 4.51 | |
| 3.65 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00073330 | 22 | 326 | 347 | LLAHQHPQAINQQFLNHPPIPR | Peptide Atlas |