AutismKB 2.0

Annotation Detail for CLASP1


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Basic Information Top
Gene Symbol:CLASP1 ( DKFZp686D1968,DKFZp686H2039,FLJ33821,FLJ41222,KIAA0622,MAST1,MGC131895 )
Gene Full Name: cytoplasmic linker associated protein 1
Band: 2q14.2-q14.3
Quick LinksEntrez ID:23332; OMIM: 605852; Uniprot ID:CLAP1_HUMAN; ENSEMBL ID: ENSG00000074054; HGNC ID: 17088
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst6 / 6231996
fetus59 / 564012104
neonate1 / 3109732
infant2 / 2362084
juvenile1 / 5555617
adult83 / 193912142
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor9 / 9417895
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor14 / 26384553
glioma4 / 10688337
head and neck tumor5 / 13630236
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor9 / 9635993
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal172 / 336030751
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer3 / 10268029
retinoblastoma4 / 4635686
skin tumor4 / 12494932
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder1 / 2975733
blood3 / 12347824
bone3 / 7165541
bone marrow0 / 488010 
brain90 / 110098981
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue15 / 21572269
esophagus0 / 202090 
eye10 / 21105447
heart1 / 8962611
intestine2 / 2344728
kidney1 / 2117774
larynx2 / 2414582
liver10 / 20774348
lung6 / 33697417
lymph0 / 442700 
lymph node6 / 9161065
mammary gland18 / 153271117
mouth3 / 6705244
muscle5 / 10771546
nerve0 / 157680 
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate6 / 18934531
salivary gland0 / 201550 
skin5 / 21057423
spleen1 / 5395218
stomach2 / 9661920
testis29 / 33044287
thymus11 / 81131135
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus6 / 23287825
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212752_at
Cell line Expression level Expression bar
721_B_lymphoblasts80.4
Adipocyte15.45
AdrenalCortex8.1
Adrenalgland23
Amygdala125.3
Appendix9.5
AtrioventricularNode6.6
BDCA4+_DentriticCells43.35
Bonemarrow17.15
BronchialEpithelialCells21.35
CD105+_Endothelial39.55
CD14+_Monocytes21.75
CD19+_BCells(neg._sel.)25.2
CD33+_Myeloid29.25
CD34+50.5
CD4+_Tcells29.75
CD56+_NKCells164
CD71+_EarlyErythroid61.7
CD8+_Tcells33.85
CardiacMyocytes12.35
Caudatenucleus26.2
Cerebellum45.6
CerebellumPeduncles48.5
CiliaryGanglion8.85
CingulateCortex48.25
Colorectaladenocarcinoma18.2
DorsalRootGanglion8.35
FetalThyroid14.95
Fetalbrain240.1
Fetalliver14.45
Fetallung17.1
GlobusPallidus11.65
Heart24.75
Hypothalamus58.25
Kidney10.15
Leukemia_chronicMyelogenousK-56217.25
Leukemia_promyelocytic-HL-609.25
Leukemialymphoblastic(MOLT-4)26.65
Liver21.45
Lung38.65
Lymphnode18.5
Lymphoma_burkitts(Daudi)31.1
Lymphoma_burkitts(Raji)44.8
MedullaOblongata60.4
OccipitalLobe30.15
OlfactoryBulb11.9
Ovary5.65
Pancreas14.85
PancreaticIslet22.85
ParietalLobe39.4
Pituitary18.4
Placenta10.9
Pons16.5
PrefrontalCortex187.75
Prostate79.15
Salivarygland8.75
SkeletalMuscle17.3
Skin6.7
SmoothMuscle22.7
Spinalcord29.8
SubthalamicNucleus25.15
SuperiorCervicalGanglion10.15
TemporalLobe37.45
Testis17.85
TestisGermCell15.15
TestisIntersitial11.65
TestisLeydigCell8.85
TestisSeminiferousTubule9.35
Thalamus25.25
Thymus20.6
Thyroid46.15
Tongue14.8
Tonsil12.35
Trachea13.2
TrigeminalGanglion8.5
Uterus33.6
UterusCorpus7.8
WholeBlood23.55
Wholebrain117.4
colon19.85
pineal_day37.4
pineal_night51.78
retina58.975
small_intestine29.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P311232
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.68 ± 0.3
Basal Forebrain7.31 ± 0.23
Basal Part of Pons7.71 ± 0.34
Cerebellar Cortex7.53 ± 0.24
Cerebellar Nuclei7.35 ± 0.54
Claustrum7.49 ± 0.45
Epithalamus6.85 ± 0.37
Frontal Lobe7.41 ± 0.3
Globus Pallidus7.26 ± 0.32
Hypothalamus7.23 ± 0.42
Insula7.34 ± 0.3
Limbic Lobe7.66 ± 0.36
Mesencephalon7.44 ± 0.33
Myelencephalon7.45 ± 0.36
Occipital Lobe7.82 ± 0.31
Parietal Lobe7.49 ± 0.34
Pontine Tegmentum7.39 ± 0.34
Striatum7.63 ± 0.4
Subthalamus7.49 ± 0.18
Temporal Lobe7.36 ± 0.38
Thalamus7.46 ± 0.27
White Matter6.65 ± 0.42
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00008394 19 1426 1444 VLCPIIQTADYPINLAAIK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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