AutismKB 2.0

Annotation Detail for FNTA


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Basic Information Top
Gene Symbol:FNTA ( FPTA,MGC99680,PGGT1A,PTAR2 )
Gene Full Name: farnesyltransferase, CAAX box, alpha
Band: 8p11.21
Quick LinksEntrez ID:2339; OMIM: 134635; Uniprot ID:FNTA_HUMAN; ENSEMBL ID: ENSG00000168522; HGNC ID: 3782
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body9 / 70761127
blastocyst7 / 62319112
fetus53 / 56401293
neonate0 / 310970 
infant2 / 2362084
juvenile10 / 55556179
adult164 / 193912184
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor3 / 9417831
cervical tumor2 / 3436658
chondrosarcoma14 / 82823169
colorectal tumor11 / 11424696
esophageal tumor0 / 172900 
gastrointestinal tumor9 / 11936975
germ cell tumor10 / 26384537
glioma2 / 10688318
head and neck tumor6 / 13630244
kidney tumor5 / 6895972
leukemia5 / 9584252
liver tumor4 / 9635941
lung tumor9 / 10312787
lymphoma5 / 7175569
non-neoplasia7 / 9725071
normal272 / 336030780
ovarian tumor5 / 7668265
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS12 / 12568095
prostate cancer5 / 10268048
retinoblastoma8 / 46356172
skin tumor14 / 124949112
soft tissue/muscle tissue tumor10 / 12519179
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder1 / 2975733
blood6 / 12347848
bone13 / 71655181
bone marrow4 / 4880181
brain56 / 110098950
cervix2 / 4817141
connective tissue15 / 149255100
ear4 / 16212246
embryonic tissue24 / 215722111
esophagus0 / 202090 
eye19 / 21105490
heart13 / 89626145
intestine15 / 23447263
kidney10 / 21177747
larynx2 / 2414582
liver9 / 20774343
lung30 / 33697489
lymph2 / 4427045
lymph node10 / 91610109
mammary gland7 / 15327145
mouth0 / 670520 
muscle3 / 10771527
nerve3 / 15768190
ovary5 / 10205148
pancreas16 / 21481274
parathyroid5 / 20539243
pharynx0 / 413280 
pituitary gland3 / 16585180
placenta28 / 28082599
prostate15 / 18934579
salivary gland1 / 2015549
skin27 / 210574128
spleen1 / 5395218
stomach15 / 96619155
testis22 / 33044266
thymus2 / 8113124
thyroid5 / 47473105
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus9 / 23287838
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200090_at
Cell line Expression level Expression bar
721_B_lymphoblasts764.3
Adipocyte340.55
AdrenalCortex166.35
Adrenalgland95.55
Amygdala410.2
Appendix115.35
AtrioventricularNode96.95
BDCA4+_DentriticCells670.15
Bonemarrow77.95
BronchialEpithelialCells665.55
CD105+_Endothelial316.25
CD14+_Monocytes572.05
CD19+_BCells(neg._sel.)693.1
CD33+_Myeloid596.65
CD34+665.85
CD4+_Tcells713.8
CD56+_NKCells914.55
CD71+_EarlyErythroid92.55
CD8+_Tcells699.75
CardiacMyocytes214.5
Caudatenucleus274.65
Cerebellum85.95
CerebellumPeduncles237.1
CiliaryGanglion83.5
CingulateCortex225.6
Colorectaladenocarcinoma304.3
DorsalRootGanglion144.1
FetalThyroid421.75
Fetalbrain345.85
Fetalliver125.05
Fetallung298.05
GlobusPallidus111.5
Heart37.4
Hypothalamus736.35
Kidney79.4
Leukemia_chronicMyelogenousK-562436.05
Leukemia_promyelocytic-HL-60462.8
Leukemialymphoblastic(MOLT-4)382.05
Liver58.2
Lung139.1
Lymphnode340.1
Lymphoma_burkitts(Daudi)616.2
Lymphoma_burkitts(Raji)253.5
MedullaOblongata254.4
OccipitalLobe336.35
OlfactoryBulb741.1
Ovary110.55
Pancreas345.45
PancreaticIslet351.85
ParietalLobe312.4
Pituitary290.55
Placenta302.95
Pons143.65
PrefrontalCortex511.25
Prostate396.9
Salivarygland173.2
SkeletalMuscle117.85
Skin99.05
SmoothMuscle352.05
Spinalcord1289.8
SubthalamicNucleus173.2
SuperiorCervicalGanglion102.9
TemporalLobe144.15
Testis140.85
TestisGermCell279
TestisIntersitial231.8
TestisLeydigCell177.7
TestisSeminiferousTubule179.65
Thalamus360.9
Thymus184.2
Thyroid563.8
Tongue263.25
Tonsil313.45
Trachea122.45
TrigeminalGanglion145.9
Uterus412.1
UterusCorpus151.8
WholeBlood469.15
Wholebrain254
colon218.4
pineal_day395.06
pineal_night358.44
retina495.45
small_intestine227
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7692_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.58 ± 0.45
Basal Forebrain6.97 ± 0.24
Basal Part of Pons7.01 ± 0.33
Cerebellar Cortex6.84 ± 0.21
Cerebellar Nuclei7.48 ± 0.54
Claustrum6.74 ± 0.38
Epithalamus7 ± 0.44
Frontal Lobe6.92 ± 0.42
Globus Pallidus8.02 ± 0.36
Hypothalamus6.94 ± 0.32
Insula6.64 ± 0.31
Limbic Lobe6.58 ± 0.39
Mesencephalon6.95 ± 0.49
Myelencephalon6.86 ± 0.45
Occipital Lobe6.8 ± 0.33
Parietal Lobe6.85 ± 0.43
Pontine Tegmentum6.98 ± 0.34
Striatum6.84 ± 0.42
Subthalamus7.46 ± 0.27
Temporal Lobe6.73 ± 0.31
Thalamus7.07 ± 0.34
White Matter8.7 ± 0.33
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00065126 18 147 164 DLHEEMNYITAIIEEQPK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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