AutismKB 2.0

Annotation Detail for SLC35A3


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Basic Information Top
Gene Symbol:SLC35A3 ( DKFZp781P1297 )
Gene Full Name: solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3
Band: 1p21.2
Quick LinksEntrez ID:23443; OMIM: 605632; Uniprot ID:S35A3_HUMAN; ENSEMBL ID: ENSG00000117620; HGNC ID: 11023
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus10 / 56401217
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult73 / 193912137
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma0 / 828230 
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor5 / 26384518
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor8 / 9635983
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal95 / 336030728
ovarian tumor1 / 7668213
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer6 / 10268058
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder1 / 2975733
blood2 / 12347816
bone1 / 7165513
bone marrow1 / 4880120
brain6 / 11009895
cervix1 / 4817120
connective tissue2 / 14925513
ear1 / 1621261
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye15 / 21105471
heart1 / 8962611
intestine12 / 23447251
kidney15 / 21177770
larynx2 / 2414582
liver12 / 20774357
lung7 / 33697420
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary2 / 10205119
pancreas4 / 21481218
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta17 / 28082560
prostate9 / 18934547
salivary gland0 / 201550 
skin4 / 21057418
spleen0 / 539520 
stomach5 / 9661951
testis6 / 33044218
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus13 / 23287855
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206770_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts16.8
Adipocyte15.2
AdrenalCortex25.15
Adrenalgland13.65
Amygdala16.1
Appendix22.85
AtrioventricularNode20.05
BDCA4+_DentriticCells17.85
Bonemarrow16.8
BronchialEpithelialCells21.4
CD105+_Endothelial15.4
CD14+_Monocytes17.05
CD19+_BCells(neg._sel.)23.45
CD33+_Myeloid27.5
CD34+23.55
CD4+_Tcells20.6
CD56+_NKCells18.55
CD71+_EarlyErythroid14.4
CD8+_Tcells18.9
CardiacMyocytes29.05
Caudatenucleus11.45
Cerebellum11.45
CerebellumPeduncles18.9
CiliaryGanglion15.8
CingulateCortex15.2
Colorectaladenocarcinoma15.85
DorsalRootGanglion16.6
FetalThyroid27.5
Fetalbrain16.75
Fetalliver25.6
Fetallung11.55
GlobusPallidus14.45
Heart27.4
Hypothalamus14.15
Kidney15.75
Leukemia_chronicMyelogenousK-56219.25
Leukemia_promyelocytic-HL-6020
Leukemialymphoblastic(MOLT-4)15.1
Liver28.2
Lung16.05
Lymphnode12.75
Lymphoma_burkitts(Daudi)20.95
Lymphoma_burkitts(Raji)24.25
MedullaOblongata12.2
OccipitalLobe13.15
OlfactoryBulb10.3
Ovary14.4
Pancreas69.95
PancreaticIslet21.5
ParietalLobe16.6
Pituitary18.35
Placenta14.7
Pons14.8
PrefrontalCortex17.1
Prostate125.1
Salivarygland14.2
SkeletalMuscle21.1
Skin20
SmoothMuscle27.15
Spinalcord14
SubthalamicNucleus13.55
SuperiorCervicalGanglion31.25
TemporalLobe13.3
Testis11.25
TestisGermCell11.3
TestisIntersitial13.85
TestisLeydigCell17
TestisSeminiferousTubule13.05
Thalamus14.5
Thymus11.3
Thyroid109
Tongue16.1
Tonsil15.55
Trachea64.25
TrigeminalGanglion25.2
Uterus17.95
UterusCorpus15.9
WholeBlood16.8
Wholebrain11.95
colon543.1
pineal_day17.1
pineal_night21.04
retina18.5
small_intestine286.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1212_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.24 ± 0.3
Basal Forebrain5.21 ± 0.27
Basal Part of Pons4.89 ± 0.41
Cerebellar Cortex5.64 ± 0.25
Cerebellar Nuclei5.49 ± 0.69
Claustrum4.98 ± 0.8
Epithalamus5.86 ± 0.37
Frontal Lobe5.23 ± 0.46
Globus Pallidus5.31 ± 0.37
Hypothalamus5.32 ± 0.62
Insula5.29 ± 0.6
Limbic Lobe5.22 ± 0.43
Mesencephalon5.44 ± 0.44
Myelencephalon5.26 ± 0.5
Occipital Lobe5.39 ± 0.44
Parietal Lobe5.26 ± 0.56
Pontine Tegmentum5.25 ± 0.52
Striatum4.99 ± 0.4
Subthalamus5.34 ± 0.77
Temporal Lobe5.27 ± 0.49
Thalamus5.14 ± 0.5
White Matter6.1 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc35a3CBCerebellum3.72
3.4
Slc35a3CTXCerebral cortex2.32
1.91
Slc35a3HIPHippocampal region4.01
2.4
Slc35a3HPFHippocampal formation4.68
4.14
Slc35a3HYHypothalamus1.78
1.09
Slc35a3LSXLateral septal complex0.79
0.62
Slc35a3MBMidbrain1.72
1.45
Slc35a3MYMedulla4.56
4.1
Slc35a3OLFOlfactory bulb4.56
4.21
Slc35a3PPons4.43
3.3
Slc35a3PALPallidum2.19
1.18
Slc35a3RHPRetrohippocampal region4.77
5.38
Slc35a3sAMYStriatum-like amygdalar nuclei3.32
2.09
Slc35a3STRStriatum1.16
0.77
Slc35a3STRdStriatum dorsal region0.88
0.59
Slc35a3STRvStriatum ventral region1.24
0.8
Slc35a3THThalamus2.09
1.33
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00008421 15 114 128 VLHDEILNKPMETLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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