AutismKB 2.0

Annotation Detail for ABCB9


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Basic Information Top
Gene Symbol:ABCB9 ( EST122234,KIAA1520,TAPL,hABCB9 )
Gene Full Name: ATP-binding cassette, sub-family B (MDR/TAP), member 9
Band: 12q24.31
Quick LinksEntrez ID:23457; OMIM: 605453; Uniprot ID:ABCB9_HUMAN; ENSEMBL ID: ENSG00000150967; HGNC ID: 50
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus24 / 56401242
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult38 / 193912119
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor6 / 11936950
germ cell tumor16 / 26384560
glioma2 / 10688318
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal112 / 336030733
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma2 / 4635643
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain92 / 110098983
cervix4 / 4817183
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye8 / 21105437
heart0 / 896260 
intestine2 / 2344728
kidney3 / 21177714
larynx0 / 241450 
liver2 / 2077439
lung3 / 3369748
lymph0 / 442700 
lymph node1 / 9161010
mammary gland2 / 15327113
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland1 / 2015549
skin1 / 2105744
spleen0 / 539520 
stomach3 / 9661931
testis24 / 33044272
thymus5 / 8113161
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207321_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts41.4
Adipocyte42.6
AdrenalCortex67.95
Adrenalgland54.55
Amygdala51.25
Appendix56.95
AtrioventricularNode90.25
BDCA4+_DentriticCells35
Bonemarrow101.25
BronchialEpithelialCells17.8
CD105+_Endothelial42.95
CD14+_Monocytes26.55
CD19+_BCells(neg._sel.)42.45
CD33+_Myeloid44.85
CD34+57.5
CD4+_Tcells39.6
CD56+_NKCells43.9
CD71+_EarlyErythroid171
CD8+_Tcells32
CardiacMyocytes58.1
Caudatenucleus81.55
Cerebellum52.9
CerebellumPeduncles75.75
CiliaryGanglion85.9
CingulateCortex58.35
Colorectaladenocarcinoma44.65
DorsalRootGanglion89.8
FetalThyroid50.7
Fetalbrain49.35
Fetalliver63.55
Fetallung38.45
GlobusPallidus66.2
Heart76.25
Hypothalamus51.9
Kidney67.95
Leukemia_chronicMyelogenousK-56255.1
Leukemia_promyelocytic-HL-6035.8
Leukemialymphoblastic(MOLT-4)40.85
Liver73.45
Lung47.9
Lymphnode40.05
Lymphoma_burkitts(Daudi)68.1
Lymphoma_burkitts(Raji)76.3
MedullaOblongata50.2
OccipitalLobe45.95
OlfactoryBulb45.5
Ovary41.9
Pancreas41.15
PancreaticIslet63.1
ParietalLobe91.4
Pituitary59.95
Placenta46.05
Pons66.35
PrefrontalCortex61.55
Prostate42.15
Salivarygland42.4
SkeletalMuscle69.6
Skin58.85
SmoothMuscle22.4
Spinalcord87.15
SubthalamicNucleus109.25
SuperiorCervicalGanglion93.6
TemporalLobe52.4
Testis56.15
TestisGermCell48.7
TestisIntersitial50.9
TestisLeydigCell77.7
TestisSeminiferousTubule62.5
Thalamus63.6
Thymus30.95
Thyroid50
Tongue59.55
Tonsil50.3
Trachea45.25
TrigeminalGanglion57.85
Uterus26.3
UterusCorpus55.4
WholeBlood24.8
Wholebrain38.35
colon9.35
pineal_day48.7
pineal_night48.96
retina48.8
small_intestine8.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P312895
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.97 ± 0.75
Basal Forebrain3.54 ± 0.31
Basal Part of Pons3.75 ± 0.57
Cerebellar Cortex4.32 ± 0.29
Cerebellar Nuclei3.65 ± 0.63
Claustrum3.85 ± 0.77
Epithalamus3.31 ± 0.98
Frontal Lobe3.71 ± 0.55
Globus Pallidus3.37 ± 0.57
Hypothalamus3.61 ± 0.62
Insula3.7 ± 0.65
Limbic Lobe3.85 ± 0.64
Mesencephalon3.79 ± 0.63
Myelencephalon3.83 ± 0.58
Occipital Lobe4.19 ± 0.58
Parietal Lobe3.94 ± 0.51
Pontine Tegmentum3.69 ± 0.67
Striatum3.62 ± 0.7
Subthalamus4.1 ± 0.17
Temporal Lobe3.77 ± 0.52
Thalamus3.66 ± 0.58
White Matter3.01 ± 0.81
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Abcb9CBCerebellum23.07
33.56
Abcb9CTXCerebral cortex69.14
53.79
Abcb9HIPHippocampal region20.38
21.3
Abcb9HPFHippocampal formation32.48
29.02
Abcb9HYHypothalamus16.2
12.58
Abcb9LSXLateral septal complex9.81
7.31
Abcb9MBMidbrain31.68
30.39
Abcb9MYMedulla42.28
53.33
Abcb9OLFOlfactory bulb38.09
29.07
Abcb9PPons36.67
41.68
Abcb9PALPallidum25.9
24.97
Abcb9RHPRetrohippocampal region56.02
42.31
Abcb9sAMYStriatum-like amygdalar nuclei11.53
8.1
Abcb9STRStriatum61.96
45.74
Abcb9STRdStriatum dorsal region75.93
54.87
Abcb9STRvStriatum ventral region61.38
49.17
Abcb9THThalamus29.02
23.75
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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