Annotation Detail for CBX6


Gene Symbol: | CBX6 ( - ) |
---|---|
Gene Full Name: | chromobox homolog 6 |
Band: | 22q13.1 |
Quick Links | Entrez ID:23466; OMIM: NA; Uniprot ID:CBX6_HUMAN; ENSEMBL ID: ENSG00000183741; HGNC ID: 1556 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.592201
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 7 / 70761 | 98 | ![]() |
blastocyst | 1 / 62319 | 16 | ![]() |
fetus | 6 / 564012 | 10 | ![]() |
neonate | 0 / 31097 | 0 | |
infant | 1 / 23620 | 42 | ![]() |
juvenile | 10 / 55556 | 179 | ![]() |
adult | 54 / 1939121 | 27 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 3 / 94178 | 31 | ![]() |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 4 / 82823 | 48 | ![]() |
colorectal tumor | 1 / 114246 | 8 | ![]() |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 1 / 119369 | 8 | ![]() |
germ cell tumor | 6 / 263845 | 22 | ![]() |
glioma | 7 / 106883 | 65 | ![]() |
head and neck tumor | 7 / 136302 | 51 | ![]() |
kidney tumor | 4 / 68959 | 58 | ![]() |
leukemia | 3 / 95842 | 31 | ![]() |
liver tumor | 0 / 96359 | 0 | |
lung tumor | 5 / 103127 | 48 | ![]() |
lymphoma | 13 / 71755 | 181 | ![]() |
non-neoplasia | 0 / 97250 | 0 | |
normal | 99 / 3360307 | 29 | ![]() |
ovarian tumor | 1 / 76682 | 13 | ![]() |
pancreatic tumor | 4 / 104616 | 38 | ![]() |
primitive neuroectodermal tumor of the CNS | 13 / 125680 | 103 | ![]() |
prostate cancer | 4 / 102680 | 38 | ![]() |
retinoblastoma | 5 / 46356 | 107 | ![]() |
skin tumor | 24 / 124949 | 192 | ![]() |
soft tissue/muscle tissue tumor | 13 / 125191 | 103 | ![]() |
uterine tumor | 4 / 90257 | 44 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 2 / 13106 | 152 | ![]() |
adrenal gland | 0 / 33197 | 0 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 2 / 123478 | 16 | ![]() |
bone | 4 / 71655 | 55 | ![]() |
bone marrow | 1 / 48801 | 20 | ![]() |
brain | 33 / 1100989 | 29 | ![]() |
cervix | 1 / 48171 | 20 | ![]() |
connective tissue | 1 / 149255 | 6 | ![]() |
ear | 1 / 16212 | 61 | ![]() |
embryonic tissue | 9 / 215722 | 41 | ![]() |
esophagus | 0 / 20209 | 0 | |
eye | 22 / 211054 | 104 | ![]() |
heart | 0 / 89626 | 0 | |
intestine | 3 / 234472 | 12 | ![]() |
kidney | 5 / 211777 | 23 | ![]() |
larynx | 1 / 24145 | 41 | ![]() |
liver | 0 / 207743 | 0 | |
lung | 8 / 336974 | 23 | ![]() |
lymph | 6 / 44270 | 135 | ![]() |
lymph node | 10 / 91610 | 109 | ![]() |
mammary gland | 3 / 153271 | 19 | ![]() |
mouth | 0 / 67052 | 0 | |
muscle | 3 / 107715 | 27 | ![]() |
nerve | 4 / 15768 | 253 | ![]() |
ovary | 3 / 102051 | 29 | ![]() |
pancreas | 8 / 214812 | 37 | ![]() |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 1 / 16585 | 60 | ![]() |
placenta | 4 / 280825 | 14 | ![]() |
prostate | 5 / 189345 | 26 | ![]() |
salivary gland | 5 / 20155 | 248 | ![]() |
skin | 27 / 210574 | 128 | ![]() |
spleen | 5 / 53952 | 92 | ![]() |
stomach | 0 / 96619 | 0 | |
testis | 0 / 330442 | 0 | |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 17 / 232878 | 72 | ![]() |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 202048_s_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 157.85 | ![]() |
Adipocyte | 77 | ![]() |
AdrenalCortex | 77.45 | ![]() |
Adrenalgland | 79.45 | ![]() |
Amygdala | 99.05 | ![]() |
Appendix | 76.9 | ![]() |
AtrioventricularNode | 56.1 | ![]() |
BDCA4+_DentriticCells | 271.9 | ![]() |
Bonemarrow | 75.15 | ![]() |
BronchialEpithelialCells | 58.25 | ![]() |
CD105+_Endothelial | 78.9 | ![]() |
CD14+_Monocytes | 80.85 | ![]() |
CD19+_BCells(neg._sel.) | 81.95 | ![]() |
CD33+_Myeloid | 115.9 | ![]() |
CD34+ | 100.7 | ![]() |
CD4+_Tcells | 86.6 | ![]() |
CD56+_NKCells | 139.1 | ![]() |
CD71+_EarlyErythroid | 71.85 | ![]() |
CD8+_Tcells | 77.2 | ![]() |
CardiacMyocytes | 95.85 | ![]() |
Caudatenucleus | 236.7 | ![]() |
Cerebellum | 364.45 | ![]() |
CerebellumPeduncles | 250.75 | ![]() |
CiliaryGanglion | 48 | ![]() |
CingulateCortex | 346.6 | ![]() |
Colorectaladenocarcinoma | 78.5 | ![]() |
DorsalRootGanglion | 56.55 | ![]() |
FetalThyroid | 81.85 | ![]() |
Fetalbrain | 97.6 | ![]() |
Fetalliver | 66.05 | ![]() |
Fetallung | 65.45 | ![]() |
GlobusPallidus | 202.45 | ![]() |
Heart | 96.35 | ![]() |
Hypothalamus | 121.25 | ![]() |
Kidney | 62.45 | ![]() |
Leukemia_chronicMyelogenousK-562 | 70.15 | ![]() |
Leukemia_promyelocytic-HL-60 | 88.95 | ![]() |
Leukemialymphoblastic(MOLT-4) | 56.25 | ![]() |
Liver | 99.8 | ![]() |
Lung | 86.55 | ![]() |
Lymphnode | 49.75 | ![]() |
Lymphoma_burkitts(Daudi) | 99.4 | ![]() |
Lymphoma_burkitts(Raji) | 106.35 | ![]() |
MedullaOblongata | 317.5 | ![]() |
OccipitalLobe | 296.6 | ![]() |
OlfactoryBulb | 61.25 | ![]() |
Ovary | 50.5 | ![]() |
Pancreas | 61.65 | ![]() |
PancreaticIslet | 157.45 | ![]() |
ParietalLobe | 186.1 | ![]() |
Pituitary | 147.8 | ![]() |
Placenta | 66.1 | ![]() |
Pons | 272.2 | ![]() |
PrefrontalCortex | 575.75 | ![]() |
Prostate | 92.2 | ![]() |
Salivarygland | 61.05 | ![]() |
SkeletalMuscle | 88.25 | ![]() |
Skin | 57.1 | ![]() |
SmoothMuscle | 93.85 | ![]() |
Spinalcord | 84.45 | ![]() |
SubthalamicNucleus | 310.05 | ![]() |
SuperiorCervicalGanglion | 83.85 | ![]() |
TemporalLobe | 636.8 | ![]() |
Testis | 62.4 | ![]() |
TestisGermCell | 47.7 | ![]() |
TestisIntersitial | 64.85 | ![]() |
TestisLeydigCell | 41.1 | ![]() |
TestisSeminiferousTubule | 57.45 | ![]() |
Thalamus | 134.45 | ![]() |
Thymus | 62.9 | ![]() |
Thyroid | 98.25 | ![]() |
Tongue | 73.55 | ![]() |
Tonsil | 75.25 | ![]() |
Trachea | 64.95 | ![]() |
TrigeminalGanglion | 56.9 | ![]() |
Uterus | 64.55 | ![]() |
UterusCorpus | 73.55 | ![]() |
WholeBlood | 72.85 | ![]() |
Wholebrain | 346.4 | ![]() |
colon | 77.85 | ![]() |
pineal_day | 97.54 | ![]() |
pineal_night | 95.38 | ![]() |
retina | 127.725 | ![]() |
small_intestine | 70.45 | ![]() |
- Probe name: CUST_1945_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 7.65 ± 0.66 | ![]() ![]() ![]() |
Basal Forebrain | 6.59 ± 0.33 | ![]() ![]() ![]() |
Basal Part of Pons | 6.3 ± 0.49 | ![]() ![]() ![]() |
Cerebellar Cortex | 6.21 ± 0.47 | ![]() ![]() ![]() |
Cerebellar Nuclei | 6.04 ± 0.4 | ![]() ![]() ![]() |
Claustrum | 7.34 ± 0.72 | ![]() ![]() ![]() |
Epithalamus | 5.78 ± 0.67 | ![]() ![]() ![]() |
Frontal Lobe | 6.52 ± 0.7 | ![]() ![]() ![]() |
Globus Pallidus | 6.17 ± 0.49 | ![]() ![]() ![]() |
Hypothalamus | 6.01 ± 0.48 | ![]() ![]() ![]() |
Insula | 6.61 ± 0.48 | ![]() ![]() ![]() |
Limbic Lobe | 7.24 ± 0.68 | ![]() ![]() ![]() |
Mesencephalon | 6.6 ± 0.69 | ![]() ![]() ![]() |
Myelencephalon | 6.74 ± 0.68 | ![]() ![]() ![]() |
Occipital Lobe | 7.22 ± 0.73 | ![]() ![]() ![]() |
Parietal Lobe | 6.78 ± 0.62 | ![]() ![]() ![]() |
Pontine Tegmentum | 6.7 ± 0.53 | ![]() ![]() ![]() |
Striatum | 7.05 ± 0.56 | ![]() ![]() ![]() |
Subthalamus | 6.28 ± 0.32 | ![]() ![]() ![]() |
Temporal Lobe | 6.73 ± 0.58 | ![]() ![]() ![]() |
Thalamus | 6.56 ± 0.48 | ![]() ![]() ![]() |
White Matter | 6.01 ± 0.57 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Cbx6 | CB | Cerebellum | 55.79 | ![]() |
80.4 | ![]() | |||
Cbx6 | CTX | Cerebral cortex | 100 | ![]() |
100 | ![]() | |||
Cbx6 | HIP | Hippocampal region | 70.91 | ![]() |
100 | ![]() | |||
Cbx6 | HPF | Hippocampal formation | 71.72 | ![]() |
92.43 | ![]() | |||
Cbx6 | HY | Hypothalamus | 8.22 | ![]() |
6.65 | ![]() | |||
Cbx6 | LSX | Lateral septal complex | 20.55 | ![]() |
16.1 | ![]() | |||
Cbx6 | MB | Midbrain | 22.62 | ![]() |
23.45 | ![]() | |||
Cbx6 | MY | Medulla | 31.87 | ![]() |
38.49 | ![]() | |||
Cbx6 | OLF | Olfactory bulb | 63.84 | ![]() |
67.48 | ![]() | |||
Cbx6 | P | Pons | 21.15 | ![]() |
25.19 | ![]() | |||
Cbx6 | PAL | Pallidum | 13.36 | ![]() |
12.6 | ![]() | |||
Cbx6 | RHP | Retrohippocampal region | 74.73 | ![]() |
68.06 | ![]() | |||
Cbx6 | sAMY | Striatum-like amygdalar nuclei | 30.38 | ![]() |
25.28 | ![]() | |||
Cbx6 | STR | Striatum | 54.9 | ![]() |
44.94 | ![]() | |||
Cbx6 | STRd | Striatum dorsal region | 68.42 | ![]() |
56.71 | ![]() | |||
Cbx6 | STRv | Striatum ventral region | 37.92 | ![]() |
30.77 | ![]() | |||
Cbx6 | TH | Thalamus | 38.61 | ![]() |
43.97 | ![]() |