AutismKB 2.0

Annotation Detail for PHF3


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Basic Information Top
Gene Symbol:PHF3 ( KIAA0244,MGC142210,MGC142212 )
Gene Full Name: PHD finger protein 3
Band: 6q12
Quick LinksEntrez ID:23469; OMIM: 607789; Uniprot ID:PHF3_HUMAN; ENSEMBL ID: ENSG00000118482; HGNC ID: 8921
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst1 / 6231916
fetus60 / 564012106
neonate0 / 310970 
infant3 / 23620127
juvenile1 / 5555617
adult115 / 193912159
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor8 / 9417884
cervical tumor1 / 3436629
chondrosarcoma13 / 82823156
colorectal tumor8 / 11424670
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor10 / 26384537
glioma1 / 1068839
head and neck tumor16 / 136302117
kidney tumor2 / 6895929
leukemia7 / 9584273
liver tumor4 / 9635941
lung tumor1 / 1031279
lymphoma2 / 7175527
non-neoplasia3 / 9725030
normal206 / 336030761
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder5 / 29757168
blood3 / 12347824
bone8 / 71655111
bone marrow6 / 48801122
brain47 / 110098942
cervix1 / 4817120
connective tissue8 / 14925553
ear5 / 16212308
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye13 / 21105461
heart5 / 8962655
intestine12 / 23447251
kidney10 / 21177747
larynx1 / 2414541
liver11 / 20774352
lung18 / 33697453
lymph2 / 4427045
lymph node12 / 91610130
mammary gland10 / 15327165
mouth8 / 67052119
muscle12 / 107715111
nerve2 / 15768126
ovary3 / 10205129
pancreas4 / 21481218
parathyroid1 / 2053948
pharynx8 / 41328193
pituitary gland6 / 16585361
placenta18 / 28082564
prostate2 / 18934510
salivary gland1 / 2015549
skin4 / 21057418
spleen1 / 5395218
stomach2 / 9661920
testis20 / 33044260
thymus4 / 8113149
thyroid3 / 4747363
tonsil0 / 169990 
trachea7 / 52413133
umbilical cord0 / 136800 
uterus11 / 23287847
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 215718_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts47.5
Adipocyte31.4
AdrenalCortex79.65
Adrenalgland32.8
Amygdala33.4
Appendix77.4
AtrioventricularNode92.75
BDCA4+_DentriticCells59.85
Bonemarrow49.65
BronchialEpithelialCells32.65
CD105+_Endothelial85.85
CD14+_Monocytes75.85
CD19+_BCells(neg._sel.)87.05
CD33+_Myeloid75.7
CD34+87
CD4+_Tcells121.45
CD56+_NKCells71.05
CD71+_EarlyErythroid45.6
CD8+_Tcells88.15
CardiacMyocytes130
Caudatenucleus32.2
Cerebellum25.9
CerebellumPeduncles69.75
CiliaryGanglion89.15
CingulateCortex51.65
Colorectaladenocarcinoma36.5
DorsalRootGanglion62.25
FetalThyroid65.15
Fetalbrain37.8
Fetalliver39.5
Fetallung20.95
GlobusPallidus44.35
Heart94.45
Hypothalamus34.25
Kidney37.85
Leukemia_chronicMyelogenousK-56230.15
Leukemia_promyelocytic-HL-6032.6
Leukemialymphoblastic(MOLT-4)25.7
Liver71.45
Lung35.15
Lymphnode28.8
Lymphoma_burkitts(Daudi)60.25
Lymphoma_burkitts(Raji)80.05
MedullaOblongata26.65
OccipitalLobe39.3
OlfactoryBulb28.05
Ovary50.6
Pancreas45.85
PancreaticIslet75.1
ParietalLobe54.1
Pituitary52.4
Placenta26.7
Pons48.8
PrefrontalCortex44.95
Prostate38.55
Salivarygland42.35
SkeletalMuscle98.95
Skin77.25
SmoothMuscle52.95
Spinalcord39.6
SubthalamicNucleus50.2
SuperiorCervicalGanglion103.4
TemporalLobe41.05
Testis28.35
TestisGermCell36.75
TestisIntersitial64.9
TestisLeydigCell62.2
TestisSeminiferousTubule56.95
Thalamus47
Thymus23
Thyroid43.1
Tongue82.8
Tonsil58.05
Trachea28.5
TrigeminalGanglion107.85
Uterus43.45
UterusCorpus57.55
WholeBlood54.35
Wholebrain19.45
colon53.05
pineal_day59.66
pineal_night65.66
retina54.85
small_intestine38.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7309_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.95 ± 0.21
Basal Forebrain8.19 ± 0.16
Basal Part of Pons7.71 ± 0.17
Cerebellar Cortex8.06 ± 0.16
Cerebellar Nuclei7.7 ± 0.29
Claustrum7.92 ± 0.24
Epithalamus7.98 ± 0.3
Frontal Lobe7.73 ± 0.26
Globus Pallidus8.18 ± 0.36
Hypothalamus7.88 ± 0.15
Insula7.7 ± 0.21
Limbic Lobe7.8 ± 0.33
Mesencephalon7.88 ± 0.21
Myelencephalon7.84 ± 0.3
Occipital Lobe8.11 ± 0.26
Parietal Lobe7.84 ± 0.24
Pontine Tegmentum7.95 ± 0.27
Striatum8.08 ± 0.32
Subthalamus7.63 ± 0.14
Temporal Lobe7.79 ± 0.19
Thalamus7.85 ± 0.2
White Matter8.69 ± 0.1
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Phf3CBCerebellum100
100
Phf3CTXCerebral cortex100
100
Phf3HIPHippocampal region100
100
Phf3HPFHippocampal formation100
100
Phf3HYHypothalamus100
96.23
Phf3LSXLateral septal complex100
100
Phf3MBMidbrain94.53
96.7
Phf3MYMedulla83.06
90.62
Phf3OLFOlfactory bulb100
100
Phf3PPons71.42
74.93
Phf3PALPallidum90.42
89.62
Phf3RHPRetrohippocampal region100
100
Phf3sAMYStriatum-like amygdalar nuclei100
100
Phf3STRStriatum100
100
Phf3STRdStriatum dorsal region100
100
Phf3STRvStriatum ventral region100
100
Phf3THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010296 22 1757 1778 GSAVATSHFEVGNTCPSEFPSK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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