AutismKB 2.0

Annotation Detail for TRAM1


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Basic Information Top
Gene Symbol:TRAM1 ( PNAS8,PRO1292,TRAM,TRAMP )
Gene Full Name: translocation associated membrane protein 1
Band: 8q13.3
Quick LinksEntrez ID:23471; OMIM: 605190; Uniprot ID:TRAM1_HUMAN; ENSEMBL ID: ENSG00000067167; HGNC ID: 20568
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body10 / 70761141
blastocyst6 / 6231996
fetus20 / 56401235
neonate7 / 31097225
infant0 / 236200 
juvenile8 / 55556143
adult193 / 193912199
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor6 / 12794468
bladder carcinoma2 / 17475114
breast (mammary gland) tumor2 / 9417821
cervical tumor5 / 34366145
chondrosarcoma11 / 82823132
colorectal tumor10 / 11424687
esophageal tumor2 / 17290115
gastrointestinal tumor26 / 119369217
germ cell tumor32 / 263845121
glioma5 / 10688346
head and neck tumor5 / 13630236
kidney tumor11 / 68959159
leukemia17 / 95842177
liver tumor15 / 96359155
lung tumor11 / 103127106
lymphoma5 / 7175569
non-neoplasia6 / 9725061
normal295 / 336030787
ovarian tumor10 / 76682130
pancreatic tumor13 / 104616124
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer8 / 10268077
retinoblastoma13 / 46356280
skin tumor5 / 12494940
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor13 / 90257144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland7 / 33197210
ascites17 / 40015424
bladder10 / 29757336
blood11 / 12347889
bone6 / 7165583
bone marrow12 / 48801245
brain45 / 110098940
cervix6 / 48171124
connective tissue11 / 14925573
ear4 / 16212246
embryonic tissue24 / 215722111
esophagus2 / 2020998
eye22 / 211054104
heart5 / 8962655
intestine19 / 23447281
kidney41 / 211777193
larynx2 / 2414582
liver23 / 207743110
lung40 / 336974118
lymph1 / 4427022
lymph node8 / 9161087
mammary gland9 / 15327158
mouth3 / 6705244
muscle13 / 107715120
nerve3 / 15768190
ovary9 / 10205188
pancreas27 / 214812125
parathyroid3 / 20539146
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta31 / 280825110
prostate18 / 18934595
salivary gland3 / 20155148
skin9 / 21057442
spleen5 / 5395292
stomach14 / 96619144
testis36 / 330442108
thymus4 / 8113149
thyroid3 / 4747363
tonsil1 / 1699958
trachea2 / 5241338
umbilical cord6 / 13680438
uterus28 / 232878120
vascular15 / 51780289
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201399_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts120.55
Adipocyte230.85
AdrenalCortex5.65
Adrenalgland14.4
Amygdala5.95
Appendix5.6
AtrioventricularNode7.75
BDCA4+_DentriticCells888
Bonemarrow30.7
BronchialEpithelialCells375.55
CD105+_Endothelial42.45
CD14+_Monocytes163.7
CD19+_BCells(neg._sel.)130.65
CD33+_Myeloid193.1
CD34+159.3
CD4+_Tcells213.9
CD56+_NKCells336.45
CD71+_EarlyErythroid21.65
CD8+_Tcells240.45
CardiacMyocytes147.1
Caudatenucleus4.75
Cerebellum4.45
CerebellumPeduncles6.4
CiliaryGanglion6.25
CingulateCortex5.35
Colorectaladenocarcinoma17.6
DorsalRootGanglion5.05
FetalThyroid5.2
Fetalbrain5.4
Fetalliver84.55
Fetallung107.4
GlobusPallidus4.55
Heart6.85
Hypothalamus6.4
Kidney10.15
Leukemia_chronicMyelogenousK-56216.75
Leukemia_promyelocytic-HL-6025.1
Leukemialymphoblastic(MOLT-4)68.3
Liver7.45
Lung27.3
Lymphnode19.55
Lymphoma_burkitts(Daudi)29.65
Lymphoma_burkitts(Raji)20.6
MedullaOblongata5.1
OccipitalLobe16.4
OlfactoryBulb9.7
Ovary50.45
Pancreas42.1
PancreaticIslet100.75
ParietalLobe6.6
Pituitary53.35
Placenta122.5
Pons6.65
PrefrontalCortex13.7
Prostate47.9
Salivarygland96.05
SkeletalMuscle6.2
Skin4.7
SmoothMuscle497.25
Spinalcord6
SubthalamicNucleus4.95
SuperiorCervicalGanglion6.15
TemporalLobe4.9
Testis33.4
TestisGermCell92.1
TestisIntersitial114.35
TestisLeydigCell90.75
TestisSeminiferousTubule32.5
Thalamus5.5
Thymus29.4
Thyroid48.55
Tongue5.3
Tonsil85.85
Trachea168.3
TrigeminalGanglion5.45
Uterus34.9
UterusCorpus17.8
WholeBlood101.5
Wholebrain5.15
colon60.5
pineal_day15.92
pineal_night16.74
retina38.525
small_intestine111.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P209806
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.29 ± 0.86
Basal Forebrain2.88 ± 0.74
Basal Part of Pons3.21 ± 0.47
Cerebellar Cortex3.09 ± 0.57
Cerebellar Nuclei3.17 ± 0.56
Claustrum3.17 ± 0.58
Epithalamus3.75 ± 0.49
Frontal Lobe3.03 ± 0.61
Globus Pallidus3.73 ± 0.48
Hypothalamus2.81 ± 0.61
Insula2.95 ± 0.43
Limbic Lobe3.06 ± 0.55
Mesencephalon3.16 ± 0.72
Myelencephalon3.18 ± 0.59
Occipital Lobe3.33 ± 0.78
Parietal Lobe3.09 ± 0.61
Pontine Tegmentum3.2 ± 0.6
Striatum3.34 ± 0.6
Subthalamus3.37 ± 0.11
Temporal Lobe3.01 ± 0.61
Thalamus3.14 ± 0.57
White Matter4.07 ± 0.6
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tram1CBCerebellum9.01
16.47
Tram1CTXCerebral cortex37.41
29.2
Tram1HIPHippocampal region26.28
30.5
Tram1HPFHippocampal formation24.88
26.75
Tram1HYHypothalamus5.16
4.31
Tram1LSXLateral septal complex3.77
3.89
Tram1MBMidbrain4.23
6.62
Tram1MYMedulla2.63
5.7
Tram1OLFOlfactory bulb24.63
22.4
Tram1PPons5.61
12.67
Tram1PALPallidum8.37
8.68
Tram1RHPRetrohippocampal region22.46
21.38
Tram1sAMYStriatum-like amygdalar nuclei32.5
23.61
Tram1STRStriatum8.79
7.05
Tram1STRdStriatum dorsal region5.24
4.61
Tram1STRvStriatum ventral region8.12
6.12
Tram1THThalamus9.03
8.67
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00030298 20 348 367 KGTENGVNGTLTSNVADSPR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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