AutismKB 2.0

Annotation Detail for SLC39A14


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Basic Information Top
Gene Symbol:SLC39A14 ( KIAA0062,LZT-Hs4,NET34,ZIP14,cig19 )
Gene Full Name: solute carrier family 39 (zinc transporter), member 14
Band: 8p21.3
Quick LinksEntrez ID:23516; OMIM: 608736; Uniprot ID:S39AE_HUMAN; ENSEMBL ID: ENSG00000104635; HGNC ID: 20858
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst6 / 6231996
fetus34 / 56401260
neonate1 / 3109732
infant0 / 236200 
juvenile1 / 5555617
adult157 / 193912180
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor5 / 34366145
chondrosarcoma14 / 82823169
colorectal tumor11 / 11424696
esophageal tumor0 / 172900 
gastrointestinal tumor15 / 119369125
germ cell tumor19 / 26384572
glioma2 / 10688318
head and neck tumor11 / 13630280
kidney tumor1 / 6895914
leukemia4 / 9584241
liver tumor7 / 9635972
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia12 / 97250123
normal231 / 336030768
ovarian tumor4 / 7668252
pancreatic tumor9 / 10461686
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer10 / 10268097
retinoblastoma6 / 46356129
skin tumor6 / 12494948
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland5 / 33197150
ascites3 / 4001574
bladder1 / 2975733
blood2 / 12347816
bone9 / 71655125
bone marrow3 / 4880161
brain43 / 110098939
cervix5 / 48171103
connective tissue31 / 149255207
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus0 / 202090 
eye26 / 211054123
heart7 / 8962678
intestine29 / 234472123
kidney5 / 21177723
larynx0 / 241450 
liver31 / 207743149
lung10 / 33697429
lymph0 / 442700 
lymph node1 / 9161010
mammary gland2 / 15327113
mouth2 / 6705229
muscle4 / 10771537
nerve1 / 1576863
ovary5 / 10205148
pancreas26 / 214812121
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta11 / 28082539
prostate15 / 18934579
salivary gland0 / 201550 
skin17 / 21057480
spleen0 / 539520 
stomach11 / 96619113
testis32 / 33044296
thymus0 / 811310 
thyroid10 / 47473210
tonsil0 / 169990 
trachea8 / 52413152
umbilical cord2 / 13680146
uterus13 / 23287855
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212110_at
Cell line Expression level Expression bar
721_B_lymphoblasts35.9
Adipocyte26.05
AdrenalCortex34
Adrenalgland55.2
Amygdala6.35
Appendix9.15
AtrioventricularNode4.95
BDCA4+_DentriticCells6.35
Bonemarrow5.45
BronchialEpithelialCells52.55
CD105+_Endothelial5.4
CD14+_Monocytes5.45
CD19+_BCells(neg._sel.)5.6
CD33+_Myeloid6.75
CD34+11.15
CD4+_Tcells6.65
CD56+_NKCells8.5
CD71+_EarlyErythroid4.75
CD8+_Tcells6.3
CardiacMyocytes24
Caudatenucleus4.7
Cerebellum6.15
CerebellumPeduncles6.15
CiliaryGanglion16.95
CingulateCortex5.5
Colorectaladenocarcinoma20.85
DorsalRootGanglion4.8
FetalThyroid115.6
Fetalbrain8.85
Fetalliver325
Fetallung183.25
GlobusPallidus4.05
Heart17.45
Hypothalamus10.15
Kidney15.45
Leukemia_chronicMyelogenousK-56225.4
Leukemia_promyelocytic-HL-6033.05
Leukemialymphoblastic(MOLT-4)6.15
Liver146
Lung8.6
Lymphnode6.6
Lymphoma_burkitts(Daudi)22.5
Lymphoma_burkitts(Raji)11.55
MedullaOblongata6.15
OccipitalLobe5.95
OlfactoryBulb6.25
Ovary39.6
Pancreas192.7
PancreaticIslet492.45
ParietalLobe5.6
Pituitary17.15
Placenta16.1
Pons11.35
PrefrontalCortex9.8
Prostate12.3
Salivarygland7.7
SkeletalMuscle11.95
Skin6.85
SmoothMuscle1082.05
Spinalcord5.8
SubthalamicNucleus6.8
SuperiorCervicalGanglion9.2
TemporalLobe6.75
Testis31.15
TestisGermCell38.8
TestisIntersitial5.45
TestisLeydigCell5.75
TestisSeminiferousTubule17
Thalamus6.2
Thymus5.3
Thyroid202.95
Tongue5.35
Tonsil5.35
Trachea14.9
TrigeminalGanglion13.75
Uterus34.6
UterusCorpus11
WholeBlood5.8
Wholebrain7.1
colon43.35
pineal_day20.42
pineal_night27.34
retina77.975
small_intestine222.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P383356
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.2 ± 0.96
Basal Forebrain2.43 ± 0.32
Basal Part of Pons2.68 ± 0.71
Cerebellar Cortex2.91 ± 0.71
Cerebellar Nuclei3.02 ± 0.68
Claustrum3.22 ± 0.84
Epithalamus2.82 ± 0.69
Frontal Lobe2.82 ± 0.74
Globus Pallidus2.95 ± 0.53
Hypothalamus2.65 ± 0.67
Insula2.78 ± 0.9
Limbic Lobe2.84 ± 0.72
Mesencephalon2.93 ± 0.77
Myelencephalon2.9 ± 0.64
Occipital Lobe3.49 ± 0.74
Parietal Lobe2.97 ± 0.69
Pontine Tegmentum2.92 ± 0.72
Striatum2.35 ± 0.7
Subthalamus3.29 ± 0.16
Temporal Lobe2.69 ± 0.77
Thalamus3.02 ± 0.59
White Matter2.75 ± 0.5
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc39a14CBCerebellum100
100
Slc39a14CTXCerebral cortex29.07
26.31
Slc39a14HIPHippocampal region32.1
20.3
Slc39a14HPFHippocampal formation33.55
24.34
Slc39a14HYHypothalamus39.06
33.36
Slc39a14LSXLateral septal complex4.61
2.81
Slc39a14MBMidbrain62.78
73.92
Slc39a14MYMedulla88.75
100
Slc39a14OLFOlfactory bulb36.35
23.15
Slc39a14PPons75.51
100
Slc39a14PALPallidum34.32
42.6
Slc39a14RHPRetrohippocampal region34.62
29.13
Slc39a14sAMYStriatum-like amygdalar nuclei18.56
13.33
Slc39a14STRStriatum10.89
7.38
Slc39a14STRdStriatum dorsal region6.48
4.06
Slc39a14STRvStriatum ventral region24.9
16.1
Slc39a14THThalamus22.43
21.91
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00003821 20 109 128 IGSSELQEFCPTILQQLDSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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