AutismKB 2.0

Annotation Detail for CLCF1


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Basic Information Top
Gene Symbol:CLCF1 ( BSF-3,BSF3,CISS2,CLC,NNT-1,NNT1,NR6 )
Gene Full Name: cardiotrophin-like cytokine factor 1
Band: 11q13.2
Quick LinksEntrez ID:23529; OMIM: 607672; Uniprot ID:CLCF1_HUMAN; ENSEMBL ID: ENSG00000175505; HGNC ID: 17412
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult31 / 193912115
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor8 / 11936967
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor4 / 10312738
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal25 / 33603077
ovarian tumor8 / 76682104
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone4 / 7165555
bone marrow1 / 4880120
brain2 / 11009891
cervix1 / 4817120
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine2 / 2344728
kidney7 / 21177733
larynx0 / 241450 
liver1 / 2077434
lung12 / 33697435
lymph0 / 442700 
lymph node5 / 9161054
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary8 / 10205178
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta5 / 28082517
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen1 / 5395218
stomach11 / 96619113
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219500_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.2
Adipocyte8
AdrenalCortex11.95
Adrenalgland6.65
Amygdala6.75
Appendix12.7
AtrioventricularNode9.9
BDCA4+_DentriticCells8.5
Bonemarrow8.1
BronchialEpithelialCells7.7
CD105+_Endothelial10.6
CD14+_Monocytes8.8
CD19+_BCells(neg._sel.)24
CD33+_Myeloid10.5
CD34+10.65
CD4+_Tcells8.95
CD56+_NKCells9.85
CD71+_EarlyErythroid7.7
CD8+_Tcells9.05
CardiacMyocytes9.85
Caudatenucleus7.25
Cerebellum7.45
CerebellumPeduncles18.25
CiliaryGanglion7
CingulateCortex9
Colorectaladenocarcinoma9.6
DorsalRootGanglion7.75
FetalThyroid9.15
Fetalbrain7.7
Fetalliver7
Fetallung6.05
GlobusPallidus6.55
Heart13.7
Hypothalamus8.95
Kidney6.55
Leukemia_chronicMyelogenousK-5627.95
Leukemia_promyelocytic-HL-606.95
Leukemialymphoblastic(MOLT-4)6.3
Liver11
Lung8.4
Lymphnode6.45
Lymphoma_burkitts(Daudi)10.45
Lymphoma_burkitts(Raji)12.75
MedullaOblongata7.5
OccipitalLobe7.25
OlfactoryBulb7.35
Ovary7.6
Pancreas6.6
PancreaticIslet8.5
ParietalLobe8.4
Pituitary9.2
Placenta7.05
Pons7.8
PrefrontalCortex9.45
Prostate9.05
Salivarygland8.6
SkeletalMuscle13.2
Skin6.9
SmoothMuscle9.2
Spinalcord8.6
SubthalamicNucleus7.5
SuperiorCervicalGanglion11.25
TemporalLobe7.95
Testis6.75
TestisGermCell6.75
TestisIntersitial7.85
TestisLeydigCell8.05
TestisSeminiferousTubule10.85
Thalamus8.3
Thymus5.35
Thyroid9
Tongue10.35
Tonsil8.1
Trachea8.1
TrigeminalGanglion11.85
Uterus6.4
UterusCorpus23
WholeBlood10.4
Wholebrain4.95
colon8.05
pineal_day10.6
pineal_night11.52
retina10.375
small_intestine7.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15485_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.08 ± 0.76
Basal Forebrain2.7 ± 0.48
Basal Part of Pons2.73 ± 0.63
Cerebellar Cortex2.71 ± 0.58
Cerebellar Nuclei3.09 ± 0.77
Claustrum3.51 ± 0.85
Epithalamus2.2 ± 0.55
Frontal Lobe2.79 ± 0.68
Globus Pallidus2.97 ± 0.79
Hypothalamus2.57 ± 0.82
Insula2.41 ± 0.61
Limbic Lobe2.8 ± 0.69
Mesencephalon2.83 ± 0.68
Myelencephalon2.9 ± 0.72
Occipital Lobe2.68 ± 0.76
Parietal Lobe2.92 ± 0.65
Pontine Tegmentum2.72 ± 0.67
Striatum2.77 ± 0.82
Subthalamus3.07 ± 0.65
Temporal Lobe2.7 ± 0.78
Thalamus2.83 ± 0.72
White Matter3.1 ± 0.29
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Clcf1CBCerebellum0.53
0.45
Clcf1CTXCerebral cortex3.66
1.41
Clcf1HIPHippocampal region0.61
0.44
Clcf1HPFHippocampal formation0.48
0.29
Clcf1HYHypothalamus2.57
0.82
Clcf1LSXLateral septal complex0
0
Clcf1MBMidbrain1.44
0.62
Clcf1MYMedulla1.71
1.04
Clcf1OLFOlfactory bulb3.62
2.58
Clcf1PPons1.97
0.93
Clcf1PALPallidum0.58
0.78
Clcf1RHPRetrohippocampal region0.27
0.1
Clcf1sAMYStriatum-like amygdalar nuclei0.32
0.11
Clcf1STRStriatum2
0.8
Clcf1STRdStriatum dorsal region2.73
1.13
Clcf1STRvStriatum ventral region0.99
0.34
Clcf1THThalamus2.22
0.77
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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