AutismKB 2.0

Annotation Detail for SLC16A8


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Basic Information Top
Gene Symbol:SLC16A8 ( MCT3,REMP )
Gene Full Name: solute carrier family 16, member 8 (monocarboxylic acid transporter 3)
Band: 22q13.1
Quick LinksEntrez ID:23539; OMIM: 610409; Uniprot ID:MOT3_HUMAN; ENSEMBL ID: ENSG00000100156; HGNC ID: 16270
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult6 / 19391213
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal12 / 33603073
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix1 / 4817120
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye8 / 21105437
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220455_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.5
Adipocyte13.7
AdrenalCortex7.05
Adrenalgland5.7
Amygdala8.8
Appendix5.9
AtrioventricularNode5.1
BDCA4+_DentriticCells7.65
Bonemarrow6.85
BronchialEpithelialCells6.75
CD105+_Endothelial6.95
CD14+_Monocytes8.15
CD19+_BCells(neg._sel.)7.3
CD33+_Myeloid8.75
CD34+8.1
CD4+_Tcells7.45
CD56+_NKCells8.05
CD71+_EarlyErythroid10.55
CD8+_Tcells6.6
CardiacMyocytes11.3
Caudatenucleus6.1
Cerebellum5.5
CerebellumPeduncles7.65
CiliaryGanglion4.75
CingulateCortex6.9
Colorectaladenocarcinoma11.75
DorsalRootGanglion5.2
FetalThyroid6.6
Fetalbrain6.75
Fetalliver5.9
Fetallung5.7
GlobusPallidus4.9
Heart10.45
Hypothalamus7.45
Kidney5.35
Leukemia_chronicMyelogenousK-5626.15
Leukemia_promyelocytic-HL-605.15
Leukemialymphoblastic(MOLT-4)5.3
Liver10.35
Lung10.25
Lymphnode5.85
Lymphoma_burkitts(Daudi)8.65
Lymphoma_burkitts(Raji)10.3
MedullaOblongata6.2
OccipitalLobe6.1
OlfactoryBulb5.35
Ovary6.25
Pancreas5.45
PancreaticIslet7.3
ParietalLobe7.05
Pituitary7.75
Placenta7.05
Pons6.45
PrefrontalCortex8.65
Prostate14.25
Salivarygland5.4
SkeletalMuscle7.8
Skin5.2
SmoothMuscle7.75
Spinalcord7.65
SubthalamicNucleus6.45
SuperiorCervicalGanglion7.45
TemporalLobe6.15
Testis5.85
TestisGermCell5.45
TestisIntersitial6.6
TestisLeydigCell6.8
TestisSeminiferousTubule6.3
Thalamus7.35
Thymus5.25
Thyroid11.8
Tongue7.05
Tonsil6.7
Trachea5.6
TrigeminalGanglion6.95
Uterus5.7
UterusCorpus6.15
WholeBlood7.45
Wholebrain5.75
colon7.2
pineal_day8.96
pineal_night8.3
retina88.35
small_intestine8.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_4820_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.84 ± 0.41
Basal Forebrain5.92 ± 0.18
Basal Part of Pons5.81 ± 0.29
Cerebellar Cortex5.77 ± 0.42
Cerebellar Nuclei5.74 ± 0.52
Claustrum6 ± 0.4
Epithalamus5.49 ± 0.42
Frontal Lobe5.63 ± 0.46
Globus Pallidus6.06 ± 0.31
Hypothalamus5.86 ± 0.22
Insula5.69 ± 0.35
Limbic Lobe5.71 ± 0.53
Mesencephalon5.66 ± 0.43
Myelencephalon5.74 ± 0.45
Occipital Lobe5.62 ± 0.43
Parietal Lobe5.65 ± 0.45
Pontine Tegmentum5.65 ± 0.53
Striatum5.79 ± 0.38
Subthalamus5.69 ± 0.21
Temporal Lobe5.79 ± 0.41
Thalamus5.62 ± 0.42
White Matter6.39 ± 0.33
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc16a8CBCerebellum0.39
1.23
Slc16a8CTXCerebral cortex0.33
0.7
Slc16a8HIPHippocampal region0.17
0.44
Slc16a8HPFHippocampal formation0.15
0.31
Slc16a8HYHypothalamus0.11
0.19
Slc16a8LSXLateral septal complex0.04
0
Slc16a8MBMidbrain0.09
0.13
Slc16a8MYMedulla0.48
0.6
Slc16a8OLFOlfactory bulb1.22
2.74
Slc16a8PPons0.15
0.3
Slc16a8PALPallidum0.13
0.09
Slc16a8RHPRetrohippocampal region0.12
0.12
Slc16a8sAMYStriatum-like amygdalar nuclei0.21
0.97
Slc16a8STRStriatum0.13
0.26
Slc16a8STRdStriatum dorsal region0.13
0.22
Slc16a8STRvStriatum ventral region0.16
0.12
Slc16a8THThalamus0.46
1.27
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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