AutismKB 2.0

Annotation Detail for CARHSP1


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Basic Information Top
Gene Symbol:CARHSP1 ( CRHSP-24,CSDC1,MGC111446 )
Gene Full Name: calcium regulated heat stable protein 1, 24kDa
Band: 16p13.2
Quick LinksEntrez ID:23589; OMIM: NA; Uniprot ID:CHSP1_HUMAN; ENSEMBL ID: ENSG00000153048; HGNC ID: 17150
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst13 / 62319208
fetus102 / 564012180
neonate1 / 3109732
infant1 / 2362042
juvenile3 / 5555653
adult183 / 193912194
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor6 / 9417863
cervical tumor4 / 34366116
chondrosarcoma10 / 82823120
colorectal tumor10 / 11424687
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor56 / 263845212
glioma33 / 106883308
head and neck tumor6 / 13630244
kidney tumor3 / 6895943
leukemia13 / 95842135
liver tumor9 / 9635993
lung tumor14 / 103127135
lymphoma3 / 7175541
non-neoplasia6 / 9725061
normal343 / 3360307102
ovarian tumor10 / 76682130
pancreatic tumor14 / 104616133
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer2 / 10268019
retinoblastoma7 / 46356151
skin tumor8 / 12494964
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland1 / 3319730
ascites4 / 4001599
bladder5 / 29757168
blood6 / 12347848
bone7 / 7165597
bone marrow0 / 488010 
brain144 / 1100989130
cervix9 / 48171186
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue23 / 215722106
esophagus0 / 202090 
eye36 / 211054170
heart12 / 89626133
intestine19 / 23447281
kidney22 / 211777103
larynx0 / 241450 
liver15 / 20774372
lung28 / 33697483
lymph3 / 4427067
lymph node14 / 91610152
mammary gland7 / 15327145
mouth5 / 6705274
muscle7 / 10771564
nerve1 / 1576863
ovary16 / 102051156
pancreas19 / 21481288
parathyroid5 / 20539243
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta44 / 280825156
prostate6 / 18934531
salivary gland1 / 2015549
skin11 / 21057452
spleen3 / 5395255
stomach4 / 9661941
testis58 / 330442175
thymus7 / 8113186
thyroid0 / 474730 
tonsil2 / 16999117
trachea2 / 5241338
umbilical cord0 / 136800 
uterus9 / 23287838
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218384_at
Cell line Expression level Expression bar
721_B_lymphoblasts457.25
Adipocyte191.45
AdrenalCortex269.45
Adrenalgland272.6
Amygdala155.15
Appendix195.65
AtrioventricularNode129.45
BDCA4+_DentriticCells212.85
Bonemarrow225.45
BronchialEpithelialCells258.25
CD105+_Endothelial227.3
CD14+_Monocytes212.65
CD19+_BCells(neg._sel.)170.05
CD33+_Myeloid208.3
CD34+296.7
CD4+_Tcells165.45
CD56+_NKCells253.95
CD71+_EarlyErythroid585.85
CD8+_Tcells168.35
CardiacMyocytes459.95
Caudatenucleus154.5
Cerebellum169.4
CerebellumPeduncles181.75
CiliaryGanglion125.05
CingulateCortex150.95
Colorectaladenocarcinoma256.45
DorsalRootGanglion130.15
FetalThyroid198.95
Fetalbrain289.3
Fetalliver230.05
Fetallung341.05
GlobusPallidus111.1
Heart265.1
Hypothalamus173.95
Kidney187.8
Leukemia_chronicMyelogenousK-562281.3
Leukemia_promyelocytic-HL-60322.25
Leukemialymphoblastic(MOLT-4)567.75
Liver872.2
Lung661.5
Lymphnode189.45
Lymphoma_burkitts(Daudi)431.25
Lymphoma_burkitts(Raji)422.65
MedullaOblongata163.7
OccipitalLobe151.85
OlfactoryBulb121.8
Ovary179.2
Pancreas237.4
PancreaticIslet274.75
ParietalLobe181.65
Pituitary273.8
Placenta719.2
Pons161.35
PrefrontalCortex183.8
Prostate314.25
Salivarygland128.5
SkeletalMuscle197.85
Skin126.05
SmoothMuscle317.7
Spinalcord184.2
SubthalamicNucleus127.45
SuperiorCervicalGanglion193.75
TemporalLobe152.2
Testis823.75
TestisGermCell928.9
TestisIntersitial349.1
TestisLeydigCell580.55
TestisSeminiferousTubule605.9
Thalamus170.45
Thymus408.9
Thyroid192.7
Tongue316.65
Tonsil479.55
Trachea144.3
TrigeminalGanglion175.9
Uterus192.8
UterusCorpus196.35
WholeBlood242.2
Wholebrain145.85
colon321.3
pineal_day160.38
pineal_night151.2
retina236.925
small_intestine313.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5313_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.18 ± 0.95
Basal Forebrain1.49 ± 0.46
Basal Part of Pons1.44 ± 0.57
Cerebellar Cortex1.56 ± 0.76
Cerebellar Nuclei1.9 ± 0.81
Claustrum2.49 ± 0.85
Epithalamus1.08 ± 0.7
Frontal Lobe1.52 ± 0.77
Globus Pallidus2.32 ± 0.64
Hypothalamus1.6 ± 0.63
Insula1.26 ± 0.41
Limbic Lobe1.69 ± 0.68
Mesencephalon1.87 ± 0.73
Myelencephalon1.71 ± 0.73
Occipital Lobe1.93 ± 0.76
Parietal Lobe1.63 ± 0.63
Pontine Tegmentum1.65 ± 0.75
Striatum1.66 ± 0.68
Subthalamus1.47 ± 0.63
Temporal Lobe1.6 ± 0.81
Thalamus1.67 ± 0.65
White Matter2.41 ± 0.62
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Carhsp1CBCerebellum1.39
1.64
Carhsp1CTXCerebral cortex1.56
1.27
Carhsp1HIPHippocampal region1.55
1.83
Carhsp1HPFHippocampal formation1.48
1.52
Carhsp1HYHypothalamus1.27
0.98
Carhsp1LSXLateral septal complex3.09
4.1
Carhsp1MBMidbrain1.7
1.49
Carhsp1MYMedulla1.88
1.68
Carhsp1OLFOlfactory bulb1.41
1.62
Carhsp1PPons2.13
1.68
Carhsp1PALPallidum3.03
2.56
Carhsp1RHPRetrohippocampal region1.4
1.17
Carhsp1sAMYStriatum-like amygdalar nuclei1.39
1.09
Carhsp1STRStriatum8.82
6.9
Carhsp1STRdStriatum dorsal region9.1
6.98
Carhsp1STRvStriatum ventral region12.89
9.16
Carhsp1THThalamus2.81
2.09
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CHSP1_HUMAN_120 16 120 135 LQAVEVVITHLAPGTK PRIDE
CHSP1_HUMAN_2 24 2 25 SSEPPPPPQPPTHQASVGLLDTPR PRIDE
PAp00132381 16 121 136 LQAVEVVITHLAPGTK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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