Annotation Detail for ZMYND8
Basic Information Top
| Gene Symbol: | ZMYND8 ( MGC31836,PRKCBP1,PRO2893,RACK7 ) |
|---|---|
| Gene Full Name: | zinc finger, MYND-type containing 8 |
| Band: | 20q13.12 |
| Quick Links | Entrez ID:23613; OMIM: NA; Uniprot ID:PKCB1_HUMAN; ENSEMBL ID: ENSG00000101040; HGNC ID: 9397 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.668465
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 10 / 70761 | 141 |  |
| blastocyst | 13 / 62319 | 208 |  |
| fetus | 130 / 564012 | 230 | |
| neonate | 2 / 31097 | 64 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 8 / 55556 | 143 | |
| adult | 223 / 1939121 | 115 | |
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 9 / 564012 | 15 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 4 / 1939121 | 2 |  |
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 1 / 564012 | 1 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 3 / 1939121 | 1 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 12 / 94178 | 127 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 16 / 82823 | 193 | |
| colorectal tumor | 25 / 114246 | 218 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 33 / 263845 | 125 | |
| glioma | 15 / 106883 | 140 | |
| head and neck tumor | 14 / 136302 | 102 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 18 / 95842 | 187 | |
| liver tumor | 15 / 96359 | 155 | |
| lung tumor | 7 / 103127 | 67 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 11 / 97250 | 113 | |
| normal | 410 / 3360307 | 122 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 14 / 125680 | 111 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 8 / 124949 | 64 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 7 / 90257 | 77 | |
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 11 / 3360307 | 3 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 | |
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 3 / 3360307 | 0 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 3 / 29757 | 100 | |
| blood | 9 / 123478 | 72 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 9 / 48801 | 184 | |
| brain | 136 / 1100989 | 123 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 18 / 149255 | 120 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 31 / 215722 | 143 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 24 / 211054 | 113 | |
| heart | 10 / 89626 | 111 | |
| intestine | 47 / 234472 | 200 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 2 / 24145 | 82 | |
| liver | 24 / 207743 | 115 | |
| lung | 43 / 336974 | 127 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 22 / 91610 | 240 | |
| mammary gland | 14 / 153271 | 91 | |
| mouth | 9 / 67052 | 134 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 15 / 214812 | 69 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 27 / 280825 | 96 | |
| prostate | 13 / 189345 | 68 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 28 / 210574 | 132 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 5 / 96619 | 51 | |
| testis | 47 / 330442 | 142 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 10 / 52413 | 190 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 23 / 232878 | 98 | |
| vascular | 4 / 51780 | 77 | |
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 1 / 1100989 | 0 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 | |
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 0 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 209049_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 363.7 | |
| Adipocyte | 47.15 | |
| AdrenalCortex | 97.8 | |
| Adrenalgland | 57.8 | |
| Amygdala | 163.45 | |
| Appendix | 33.9 | |
| AtrioventricularNode | 30.7 | |
| BDCA4+_DentriticCells | 135.8 | |
| Bonemarrow | 43.45 | |
| BronchialEpithelialCells | 88.75 | |
| CD105+_Endothelial | 453.2 | |
| CD14+_Monocytes | 36.05 | |
| CD19+_BCells(neg._sel.) | 296.5 | |
| CD33+_Myeloid | 245.55 | |
| CD34+ | 730.65 | |
| CD4+_Tcells | 186.6 | |
| CD56+_NKCells | 333.7 | |
| CD71+_EarlyErythroid | 611.85 | |
| CD8+_Tcells | 310.45 | |
| CardiacMyocytes | 57.35 | |
| Caudatenucleus | 40.8 | |
| Cerebellum | 27.15 | |
| CerebellumPeduncles | 47.95 | |
| CiliaryGanglion | 24.4 | |
| CingulateCortex | 50.25 | |
| Colorectaladenocarcinoma | 198.3 | |
| DorsalRootGanglion | 26.5 | |
| FetalThyroid | 36.55 | |
| Fetalbrain | 268.55 | |
| Fetalliver | 85.4 | |
| Fetallung | 54.85 | |
| GlobusPallidus | 33.05 | |
| Heart | 41.25 | |
| Hypothalamus | 120.8 | |
| Kidney | 23.3 | |
| Leukemia_chronicMyelogenousK-562 | 100.45 | |
| Leukemia_promyelocytic-HL-60 | 29.35 | |
| Leukemialymphoblastic(MOLT-4) | 23.35 | |
| Liver | 36.65 | |
| Lung | 41.95 | |
| Lymphnode | 45.7 | |
| Lymphoma_burkitts(Daudi) | 56.25 | |
| Lymphoma_burkitts(Raji) | 157 | |
| MedullaOblongata | 67.2 | |
| OccipitalLobe | 61.1 | |
| OlfactoryBulb | 30.75 | |
| Ovary | 21.5 | |
| Pancreas | 101.7 | |
| PancreaticIslet | 40.05 | |
| ParietalLobe | 53.5 | |
| Pituitary | 113.75 | |
| Placenta | 97.55 | |
| Pons | 39.6 | |
| PrefrontalCortex | 385.95 | |
| Prostate | 46.75 | |
| Salivarygland | 27.9 | |
| SkeletalMuscle | 38.4 | |
| Skin | 25.6 | |
| SmoothMuscle | 35.1 | |
| Spinalcord | 39.15 | |
| SubthalamicNucleus | 72.15 | |
| SuperiorCervicalGanglion | 43.4 | |
| TemporalLobe | 41.7 | |
| Testis | 36.1 | |
| TestisGermCell | 58.55 | |
| TestisIntersitial | 28.7 | |
| TestisLeydigCell | 33.95 | |
| TestisSeminiferousTubule | 41.15 | |
| Thalamus | 48.2 | |
| Thymus | 31.35 | |
| Thyroid | 63.5 | |
| Tongue | 33 | |
| Tonsil | 38.65 | |
| Trachea | 29.05 | |
| TrigeminalGanglion | 30.3 | |
| Uterus | 28.35 | |
| UterusCorpus | 37.05 | |
| WholeBlood | 99.45 | |
| Wholebrain | 57.6 | |
| colon | 34.05 | |
| pineal_day | 449.24 | |
| pineal_night | 288.78 | |
| retina | 46.85 | |
| small_intestine | 39.35 | |
- Probe name: CUST_688_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.25 ± 0.46 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.24 ± 0.23 | |
| Basal Part of Pons | 6.16 ± 0.34 | |
| Cerebellar Cortex | 5.93 ± 0.37 | |
| Cerebellar Nuclei | 5.91 ± 0.59 | |
| Claustrum | 6.34 ± 0.4 | |
| Epithalamus | 5.85 ± 0.48 | |
| Frontal Lobe | 6.16 ± 0.45 | |
| Globus Pallidus | 6.29 ± 0.27 | |
| Hypothalamus | 6.08 ± 0.43 | |
| Insula | 6.05 ± 0.48 | |
| Limbic Lobe | 6.29 ± 0.49 | |
| Mesencephalon | 5.97 ± 0.41 | |
| Myelencephalon | 6.12 ± 0.41 | |
| Occipital Lobe | 6.26 ± 0.39 | |
| Parietal Lobe | 6.31 ± 0.36 | |
| Pontine Tegmentum | 6.26 ± 0.45 | |
| Striatum | 6.36 ± 0.38 | |
| Subthalamus | 5.98 ± 0.56 | |
| Temporal Lobe | 6.3 ± 0.38 | |
| Thalamus | 6.14 ± 0.35 | |
| White Matter | 6.75 ± 1.03 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Prkcbp1 | CB | Cerebellum | 45.43 | |
| 59.73 | | |||
| Prkcbp1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Prkcbp1 | HIP | Hippocampal region | 73.89 | |
| 100 | | |||
| Prkcbp1 | HPF | Hippocampal formation | 83.07 | |
| 100 | | |||
| Prkcbp1 | HY | Hypothalamus | 97.25 | |
| 87.01 | | |||
| Prkcbp1 | LSX | Lateral septal complex | 90.7 | |
| 76.94 | | |||
| Prkcbp1 | MB | Midbrain | 74.91 | |
| 73.61 | | |||
| Prkcbp1 | MY | Medulla | 76.57 | |
| 94.15 | | |||
| Prkcbp1 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Prkcbp1 | P | Pons | 70.15 | |
| 82.56 | | |||
| Prkcbp1 | PAL | Pallidum | 84.98 | |
| 88.16 | | |||
| Prkcbp1 | RHP | Retrohippocampal region | 97.66 | |
| 100 | | |||
| Prkcbp1 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 89.31 | | |||
| Prkcbp1 | STR | Striatum | 88.88 | |
| 73.73 | | |||
| Prkcbp1 | STRd | Striatum dorsal region | 82.14 | |
| 66.65 | | |||
| Prkcbp1 | STRv | Striatum ventral region | 100 | |
| 96.03 | | |||
| Prkcbp1 | TH | Thalamus | 98.31 | |
| 94.81 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00030583 | 13 | 944 | 956 | LQWLHQQELSEMK | Peptide Atlas |