AutismKB 2.0

Annotation Detail for LY96


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Basic Information Top
Gene Symbol:LY96 ( ESOP-1,MD-2,MD2,ly-96 )
Gene Full Name: lymphocyte antigen 96
Band: 8q21.11
Quick LinksEntrez ID:23643; OMIM: 605243; Uniprot ID:LY96_HUMAN; ENSEMBL ID: ENSG00000154589; HGNC ID: 17156
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult4 / 19391212
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor6 / 26384522
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal12 / 33603073
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain2 / 11009891
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney1 / 2117774
larynx0 / 241450 
liver1 / 2077434
lung0 / 3369740 
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206584_at
Cell line Expression level Expression bar
721_B_lymphoblasts40.05
Adipocyte12.55
AdrenalCortex8
Adrenalgland5.8
Amygdala6.35
Appendix16.3
AtrioventricularNode6.2
BDCA4+_DentriticCells212
Bonemarrow19.2
BronchialEpithelialCells6.1
CD105+_Endothelial7.6
CD14+_Monocytes415.2
CD19+_BCells(neg._sel.)29.2
CD33+_Myeloid468.65
CD34+8.45
CD4+_Tcells7.2
CD56+_NKCells12
CD71+_EarlyErythroid6.1
CD8+_Tcells6.6
CardiacMyocytes27.9
Caudatenucleus5.6
Cerebellum5.15
CerebellumPeduncles7.5
CiliaryGanglion4.8
CingulateCortex6.7
Colorectaladenocarcinoma6.2
DorsalRootGanglion5.15
FetalThyroid6.3
Fetalbrain5.95
Fetalliver5.85
Fetallung6.5
GlobusPallidus4.9
Heart9.05
Hypothalamus6.4
Kidney5.4
Leukemia_chronicMyelogenousK-5625.6
Leukemia_promyelocytic-HL-609.35
Leukemialymphoblastic(MOLT-4)4.9
Liver8.9
Lung7.5
Lymphnode95.9
Lymphoma_burkitts(Daudi)27.65
Lymphoma_burkitts(Raji)46.05
MedullaOblongata5.6
OccipitalLobe5.5
OlfactoryBulb5.25
Ovary4.7
Pancreas5.5
PancreaticIslet11
ParietalLobe6.95
Pituitary7.3
Placenta13.85
Pons6.25
PrefrontalCortex7.7
Prostate7.1
Salivarygland8.4
SkeletalMuscle8.05
Skin5.45
SmoothMuscle104.7
Spinalcord7.2
SubthalamicNucleus6
SuperiorCervicalGanglion7.95
TemporalLobe6.05
Testis5.3
TestisGermCell4.95
TestisIntersitial5.6
TestisLeydigCell6.55
TestisSeminiferousTubule5.45
Thalamus6.55
Thymus5.45
Thyroid8
Tongue6.6
Tonsil27.3
Trachea10.15
TrigeminalGanglion7.7
Uterus8.8
UterusCorpus6.2
WholeBlood1104.9
Wholebrain5.1
colon9.8
pineal_day10.78
pineal_night13.42
retina8.325
small_intestine32.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14318_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.22 ± 1.07
Basal Forebrain1.77 ± 0.23
Basal Part of Pons1.75 ± 0.51
Cerebellar Cortex1.55 ± 0.66
Cerebellar Nuclei2.11 ± 0.76
Claustrum2.6 ± 0.83
Epithalamus1.49 ± 0.77
Frontal Lobe1.72 ± 0.7
Globus Pallidus2.51 ± 0.66
Hypothalamus1.83 ± 0.76
Insula1.88 ± 0.68
Limbic Lobe1.89 ± 0.7
Mesencephalon2.07 ± 0.84
Myelencephalon1.86 ± 0.71
Occipital Lobe1.75 ± 0.57
Parietal Lobe1.84 ± 0.83
Pontine Tegmentum1.82 ± 0.64
Striatum1.82 ± 0.52
Subthalamus1.94 ± 0.71
Temporal Lobe1.81 ± 0.82
Thalamus1.82 ± 0.67
White Matter2.25 ± 0.46
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ly96CBCerebellum0.14
0.24
Ly96CTXCerebral cortex0.53
0.71
Ly96HIPHippocampal region0.01
0.02
Ly96HPFHippocampal formation0.05
0.1
Ly96HYHypothalamus1.25
1.71
Ly96LSXLateral septal complex0.08
0
Ly96MBMidbrain0.01
0.04
Ly96MYMedulla0.12
0.13
Ly96OLFOlfactory bulb0.36
0.8
Ly96PPons0.05
0.08
Ly96PALPallidum0
0
Ly96RHPRetrohippocampal region0.12
0.2
Ly96sAMYStriatum-like amygdalar nuclei0
0
Ly96STRStriatum0.04
0.09
Ly96STRdStriatum dorsal region0.04
0.1
Ly96STRvStriatum ventral region0.03
0.07
Ly96THThalamus0.05
0.11
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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