AutismKB 2.0

Annotation Detail for SSBP3


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Basic Information Top
Gene Symbol:SSBP3 ( CSDP,FLJ10355,SSDP,SSDP1 )
Gene Full Name: single stranded DNA binding protein 3
Band: 1p32.3
Quick LinksEntrez ID:23648; OMIM: 607390; Uniprot ID:SSBP3_HUMAN; ENSEMBL ID: ENSG00000157216; HGNC ID: 15674
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst4 / 6231964
fetus14 / 56401224
neonate0 / 310970 
infant0 / 236200 
juvenile4 / 5555671
adult75 / 193912138
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor20 / 114246175
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor18 / 26384568
glioma8 / 10688374
head and neck tumor1 / 1363027
kidney tumor3 / 6895943
leukemia5 / 9584252
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma4 / 7175555
non-neoplasia2 / 9725020
normal88 / 336030726
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer3 / 10268029
retinoblastoma6 / 46356129
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood7 / 12347856
bone4 / 7165555
bone marrow0 / 488010 
brain24 / 110098921
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue17 / 21572278
esophagus0 / 202090 
eye15 / 21105471
heart1 / 8962611
intestine24 / 234472102
kidney4 / 21177718
larynx0 / 241450 
liver2 / 2077439
lung13 / 33697438
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta14 / 28082549
prostate4 / 18934521
salivary gland0 / 201550 
skin4 / 21057418
spleen1 / 5395218
stomach3 / 9661931
testis3 / 3304429
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus14 / 23287860
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 217991_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts55.65
Adipocyte49.7
AdrenalCortex50.85
Adrenalgland61.15
Amygdala92.5
Appendix50.3
AtrioventricularNode38.65
BDCA4+_DentriticCells14.4
Bonemarrow79.9
BronchialEpithelialCells18.35
CD105+_Endothelial84.9
CD14+_Monocytes53.6
CD19+_BCells(neg._sel.)37.75
CD33+_Myeloid40.3
CD34+57.8
CD4+_Tcells44.2
CD56+_NKCells122.85
CD71+_EarlyErythroid344.2
CD8+_Tcells43
CardiacMyocytes42.6
Caudatenucleus47.2
Cerebellum96.3
CerebellumPeduncles57.85
CiliaryGanglion35.7
CingulateCortex118.4
Colorectaladenocarcinoma45.25
DorsalRootGanglion37.8
FetalThyroid30.45
Fetalbrain50.55
Fetalliver43.95
Fetallung38.5
GlobusPallidus60.2
Heart62.1
Hypothalamus50.05
Kidney41.1
Leukemia_chronicMyelogenousK-56268.5
Leukemia_promyelocytic-HL-6031.45
Leukemialymphoblastic(MOLT-4)84.85
Liver45.05
Lung41.65
Lymphnode40.5
Lymphoma_burkitts(Daudi)63.5
Lymphoma_burkitts(Raji)48.9
MedullaOblongata117.75
OccipitalLobe56.95
OlfactoryBulb41.25
Ovary35.7
Pancreas21.6
PancreaticIslet47.5
ParietalLobe85.75
Pituitary58.65
Placenta49.75
Pons68
PrefrontalCortex386.95
Prostate55.35
Salivarygland40.05
SkeletalMuscle56.25
Skin38.35
SmoothMuscle43.95
Spinalcord57.05
SubthalamicNucleus109.2
SuperiorCervicalGanglion57.8
TemporalLobe77.55
Testis50.65
TestisGermCell59.4
TestisIntersitial38.65
TestisLeydigCell46.6
TestisSeminiferousTubule44.9
Thalamus51.25
Thymus48.35
Thyroid58.55
Tongue44.4
Tonsil48.75
Trachea42.3
TrigeminalGanglion45.15
Uterus40.9
UterusCorpus41.6
WholeBlood50.85
Wholebrain113
colon50.6
pineal_day166.88
pineal_night136.36
retina86.8
small_intestine48.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P500333
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.52 ± 0.4
Basal Forebrain6.03 ± 0.25
Basal Part of Pons6.39 ± 0.33
Cerebellar Cortex5.89 ± 0.29
Cerebellar Nuclei5.77 ± 0.48
Claustrum6.94 ± 0.35
Epithalamus6.26 ± 0.54
Frontal Lobe5.94 ± 0.44
Globus Pallidus4.94 ± 0.41
Hypothalamus5.85 ± 0.61
Insula6.06 ± 0.48
Limbic Lobe6.35 ± 0.36
Mesencephalon6.1 ± 0.53
Myelencephalon6.01 ± 0.5
Occipital Lobe6.45 ± 0.41
Parietal Lobe6.34 ± 0.43
Pontine Tegmentum6 ± 0.57
Striatum5.53 ± 0.67
Subthalamus5.11 ± 0.49
Temporal Lobe6.24 ± 0.36
Thalamus5.61 ± 0.43
White Matter5.55 ± 0.69
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ssbp3CBCerebellum20.81
23.16
Ssbp3CTXCerebral cortex76.43
71.83
Ssbp3HIPHippocampal region40.17
63.53
Ssbp3HPFHippocampal formation44.62
57.69
Ssbp3HYHypothalamus22.63
20.16
Ssbp3LSXLateral septal complex15.89
14.29
Ssbp3MBMidbrain22.78
23.13
Ssbp3MYMedulla35.92
41.15
Ssbp3OLFOlfactory bulb31.17
27.63
Ssbp3PPons23.95
27.34
Ssbp3PALPallidum14.96
14.26
Ssbp3RHPRetrohippocampal region52.94
50.78
Ssbp3sAMYStriatum-like amygdalar nuclei24.27
19.14
Ssbp3STRStriatum17.01
15.24
Ssbp3STRdStriatum dorsal region13.48
13.33
Ssbp3STRvStriatum ventral region24.43
18.72
Ssbp3THThalamus11.07
11.51
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00039958 10 78 87 DTCEHSSEAK Peptide Atlas
SSBP3_HUMAN_1 17 1 17 MFAKGKGSAVPSDGQAR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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