AutismKB 2.0

Annotation Detail for TRIM29


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Basic Information Top
Gene Symbol:TRIM29 ( ATDC,FLJ36085 )
Gene Full Name: tripartite motif-containing 29
Band: 11q23.3
Quick LinksEntrez ID:23650; OMIM: 610658; Uniprot ID:TRI29_HUMAN; ENSEMBL ID: ENSG00000137699; HGNC ID: 17274
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult208 / 1939121107
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma6 / 17475343
breast (mammary gland) tumor2 / 9417821
cervical tumor20 / 34366581
chondrosarcoma1 / 8282312
colorectal tumor15 / 114246131
esophageal tumor7 / 17290404
gastrointestinal tumor8 / 11936967
germ cell tumor2 / 2638457
glioma13 / 106883121
head and neck tumor244 / 1363021790
kidney tumor0 / 689590 
leukemia6 / 9584262
liver tumor0 / 963590 
lung tumor10 / 10312796
lymphoma0 / 717550 
non-neoplasia16 / 97250164
normal249 / 336030774
ovarian tumor7 / 7668291
pancreatic tumor10 / 10461695
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor10 / 12494980
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor13 / 90257144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder10 / 29757336
blood6 / 12347848
bone0 / 716550 
bone marrow0 / 488010 
brain20 / 110098918
cervix25 / 48171518
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus7 / 20209346
eye16 / 21105475
heart10 / 89626111
intestine20 / 23447285
kidney0 / 2117770 
larynx25 / 241451035
liver0 / 2077430 
lung14 / 33697441
lymph0 / 442700 
lymph node0 / 916100 
mammary gland9 / 15327158
mouth236 / 670523519
muscle2 / 10771518
nerve0 / 157680 
ovary7 / 10205168
pancreas10 / 21481246
parathyroid0 / 205390 
pharynx15 / 41328362
pituitary gland0 / 165850 
placenta51 / 280825181
prostate22 / 189345116
salivary gland0 / 201550 
skin112 / 210574531
spleen0 / 539520 
stomach7 / 9661972
testis12 / 33044236
thymus31 / 81131382
thyroid7 / 47473147
tonsil0 / 169990 
trachea23 / 52413438
umbilical cord0 / 136800 
uterus23 / 23287898
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202504_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.45
Adipocyte4.3
AdrenalCortex4.5
Adrenalgland3.7
Amygdala4.65
Appendix4.5
AtrioventricularNode3.25
BDCA4+_DentriticCells4.8
Bonemarrow4.25
BronchialEpithelialCells562.3
CD105+_Endothelial4.3
CD14+_Monocytes4.5
CD19+_BCells(neg._sel.)4.75
CD33+_Myeloid5.65
CD34+5.5
CD4+_Tcells4.5
CD56+_NKCells5.1
CD71+_EarlyErythroid4.05
CD8+_Tcells4
CardiacMyocytes6.1
Caudatenucleus3.85
Cerebellum3.55
CerebellumPeduncles4.9
CiliaryGanglion3.1
CingulateCortex4.4
Colorectaladenocarcinoma365.5
DorsalRootGanglion3.35
FetalThyroid4.2
Fetalbrain4.8
Fetalliver4.4
Fetallung4.9
GlobusPallidus3.15
Heart5.6
Hypothalamus4.65
Kidney3.5
Leukemia_chronicMyelogenousK-5623.9
Leukemia_promyelocytic-HL-603.85
Leukemialymphoblastic(MOLT-4)3.55
Liver5.8
Lung10.35
Lymphnode3.75
Lymphoma_burkitts(Daudi)5.55
Lymphoma_burkitts(Raji)6.15
MedullaOblongata4
OccipitalLobe3.9
OlfactoryBulb3.45
Ovary2.9
Pancreas3.7
PancreaticIslet5.9
ParietalLobe4.6
Pituitary6.3
Placenta321.1
Pons4.4
PrefrontalCortex5.2
Prostate129.4
Salivarygland26.4
SkeletalMuscle6.1
Skin606.45
SmoothMuscle4.9
Spinalcord4.6
SubthalamicNucleus3.9
SuperiorCervicalGanglion4.95
TemporalLobe3.9
Testis4.2
TestisGermCell3.75
TestisIntersitial3.65
TestisLeydigCell4.3
TestisSeminiferousTubule3.8
Thalamus4.4
Thymus83.85
Thyroid5.45
Tongue1632.6
Tonsil423.65
Trachea144.45
TrigeminalGanglion4.5
Uterus3.65
UterusCorpus4.4
WholeBlood4.85
Wholebrain3.8
colon4.4
pineal_day5.34
pineal_night5.16
retina5.15
small_intestine4.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P340123
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.72 ± 0.92
Basal Forebrain7.66 ± 0.9
Basal Part of Pons7.43 ± 0.35
Cerebellar Cortex7.03 ± 0.52
Cerebellar Nuclei7.64 ± 0.49
Claustrum7.92 ± 0.95
Epithalamus6.84 ± 1.03
Frontal Lobe7.52 ± 0.76
Globus Pallidus8.34 ± 0.63
Hypothalamus7.27 ± 0.48
Insula7.44 ± 0.81
Limbic Lobe7.65 ± 0.9
Mesencephalon7.58 ± 0.67
Myelencephalon7.62 ± 0.74
Occipital Lobe7.74 ± 0.8
Parietal Lobe7.49 ± 0.72
Pontine Tegmentum7.45 ± 0.63
Striatum7.92 ± 0.8
Subthalamus7.24 ± 0.8
Temporal Lobe7.41 ± 0.87
Thalamus7.69 ± 0.7
White Matter7.34 ± 0.34
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Trim29CBCerebellum46.22
70.64
Trim29CTXCerebral cortex32.81
25.66
Trim29HIPHippocampal region21.52
26.31
Trim29HPFHippocampal formation20.17
21.14
Trim29HYHypothalamus17.4
20.95
Trim29LSXLateral septal complex6.96
7.96
Trim29MBMidbrain15.54
15.44
Trim29MYMedulla28.83
33.46
Trim29OLFOlfactory bulb21.87
18.16
Trim29PPons20.86
23.49
Trim29PALPallidum21.3
21.99
Trim29RHPRetrohippocampal region17.86
13.72
Trim29sAMYStriatum-like amygdalar nuclei39.66
34.85
Trim29STRStriatum17.92
14.72
Trim29STRdStriatum dorsal region16.37
13.05
Trim29STRvStriatum ventral region18.68
14.83
Trim29THThalamus21.08
21.8
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00096842 24 186 209 SCLVCQASFCELHLKPHLEGAAFR Peptide Atlas
TRI29_HUMAN_115 13 115 127 KPPVTFAEKGELR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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