AutismKB 2.0

Annotation Detail for CADM1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:CADM1 ( BL2,DKFZp686F1789,IGSF4,IGSF4A,MGC149785,MGC51880,NECL2,Necl-2,RA175,ST17,SYNCAM,TSLC1,sTSLC-1,sgIGSF,synCAM1 )
Gene Full Name: cell adhesion molecule 1
Band: 11q23.3
Quick LinksEntrez ID:23705; OMIM: 605686; Uniprot ID:CADM1_HUMAN; ENSEMBL ID: ENSG00000182985; HGNC ID: 5951
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body11 / 70761155
blastocyst5 / 6231980
fetus81 / 564012143
neonate0 / 310970 
infant0 / 236200 
juvenile7 / 55556125
adult154 / 193912179
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor6 / 12794468
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor0 / 1193690 
germ cell tumor19 / 26384572
glioma5 / 10688346
head and neck tumor8 / 13630258
kidney tumor9 / 68959130
leukemia0 / 958420 
liver tumor7 / 9635972
lung tumor6 / 10312758
lymphoma2 / 7175527
non-neoplasia8 / 9725082
normal325 / 336030796
ovarian tumor7 / 7668291
pancreatic tumor43 / 104616411
primitive neuroectodermal tumor of the CNS12 / 12568095
prostate cancer1 / 1026809
retinoblastoma2 / 4635643
skin tumor12 / 12494996
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor10 / 90257110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland6 / 33197180
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone5 / 7165569
bone marrow1 / 4880120
brain121 / 1100989109
cervix0 / 481710 
connective tissue7 / 14925546
ear7 / 16212431
embryonic tissue27 / 215722125
esophagus1 / 2020949
eye44 / 211054208
heart9 / 89626100
intestine2 / 2344728
kidney21 / 21177799
larynx2 / 2414582
liver11 / 20774352
lung40 / 336974118
lymph1 / 4427022
lymph node3 / 9161032
mammary gland8 / 15327152
mouth4 / 6705259
muscle12 / 107715111
nerve4 / 15768253
ovary7 / 10205168
pancreas56 / 214812260
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland4 / 16585241
placenta7 / 28082524
prostate6 / 18934531
salivary gland0 / 201550 
skin15 / 21057471
spleen0 / 539520 
stomach0 / 966190 
testis34 / 330442102
thymus2 / 8113124
thyroid7 / 47473147
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus11 / 23287847
vascular8 / 51780154
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209030_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts33.9
Adipocyte38.75
AdrenalCortex135.1
Adrenalgland135
Amygdala414.55
Appendix90.45
AtrioventricularNode69.8
BDCA4+_DentriticCells38.2
Bonemarrow51.05
BronchialEpithelialCells34.4
CD105+_Endothelial38.45
CD14+_Monocytes21.35
CD19+_BCells(neg._sel.)48.95
CD33+_Myeloid29.6
CD34+28.5
CD4+_Tcells43.4
CD56+_NKCells68.6
CD71+_EarlyErythroid37.55
CD8+_Tcells21.4
CardiacMyocytes49.35
Caudatenucleus156.7
Cerebellum170.7
CerebellumPeduncles390.85
CiliaryGanglion80.6
CingulateCortex145.05
Colorectaladenocarcinoma79.05
DorsalRootGanglion189.9
FetalThyroid760.3
Fetalbrain388.35
Fetalliver71.25
Fetallung229.65
GlobusPallidus158.45
Heart65
Hypothalamus206.6
Kidney102.7
Leukemia_chronicMyelogenousK-56238.15
Leukemia_promyelocytic-HL-6037.3
Leukemialymphoblastic(MOLT-4)34.65
Liver210.15
Lung942.05
Lymphnode44.35
Lymphoma_burkitts(Daudi)54.1
Lymphoma_burkitts(Raji)61.5
MedullaOblongata216.95
OccipitalLobe202.05
OlfactoryBulb351.35
Ovary28.75
Pancreas56.1
PancreaticIslet368.7
ParietalLobe196.95
Pituitary784.9
Placenta105.2
Pons206.85
PrefrontalCortex563.55
Prostate160.25
Salivarygland60.25
SkeletalMuscle59.55
Skin54.55
SmoothMuscle44.85
Spinalcord91.45
SubthalamicNucleus239.45
SuperiorCervicalGanglion61.55
TemporalLobe230.05
Testis238.2
TestisGermCell720.65
TestisIntersitial430.8
TestisLeydigCell162.85
TestisSeminiferousTubule231
Thalamus204.4
Thymus49.5
Thyroid658.7
Tongue41
Tonsil45.7
Trachea149.55
TrigeminalGanglion52.75
Uterus33.1
UterusCorpus97.45
WholeBlood23.15
Wholebrain165.5
colon47.2
pineal_day7423.64
pineal_night9357
retina322.575
small_intestine68.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P203120
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala11.73 ± 0.23
Basal Forebrain11.29 ± 0.27
Basal Part of Pons11.72 ± 0.2
Cerebellar Cortex11.67 ± 0.19
Cerebellar Nuclei10.52 ± 0.18
Claustrum10.87 ± 0.45
Epithalamus11.81 ± 0.25
Frontal Lobe11.21 ± 0.35
Globus Pallidus10.84 ± 0.18
Hypothalamus11.69 ± 0.31
Insula11.61 ± 0.25
Limbic Lobe11.29 ± 0.44
Mesencephalon11.18 ± 0.39
Myelencephalon11.26 ± 0.42
Occipital Lobe11.04 ± 0.24
Parietal Lobe11.07 ± 0.28
Pontine Tegmentum11.18 ± 0.37
Striatum11.2 ± 0.5
Subthalamus11.15 ± 0.37
Temporal Lobe11.38 ± 0.34
Thalamus11.22 ± 0.29
White Matter11.38 ± 0.07
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00065807 24 212 235 EDDGVPVICQVEHPAVTGNLQTQR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved