Annotation Detail for CNOT6L
Basic Information Top
| Gene Symbol: | CNOT6L ( CCR4b ) |
|---|---|
| Gene Full Name: | CCR4-NOT transcription complex, subunit 6-like |
| Band: | 4q21.1 |
| Quick Links | Entrez ID:246175; OMIM: NA; Uniprot ID:CNO6L_HUMAN; ENSEMBL ID: ENSG00000138767; HGNC ID: 18042 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.592519
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 31 / 564012 | 54 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 56 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 5 / 12794 | 390 |  |
| bladder carcinoma | 3 / 17475 | 171 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 123 / 3360307 | 36 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 5 / 33197 | 150 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 3 / 29757 | 100 | |
| blood | 3 / 123478 | 24 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 33 / 1100989 | 29 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 12 / 91610 | 130 | |
| mammary gland | 10 / 153271 | 65 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 7 / 53952 | 129 | |
| stomach | 1 / 96619 | 10 | |
| testis | 6 / 330442 | 18 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 9 / 52413 | 171 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P110304
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.1 ± 0.23 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.28 ± 0.15 | |
| Basal Part of Pons | 7.71 ± 0.34 | |
| Cerebellar Cortex | 8.42 ± 0.16 | |
| Cerebellar Nuclei | 8.24 ± 0.23 | |
| Claustrum | 8.06 ± 0.32 | |
| Epithalamus | 8.31 ± 0.19 | |
| Frontal Lobe | 8.01 ± 0.26 | |
| Globus Pallidus | 7.95 ± 0.21 | |
| Hypothalamus | 8.34 ± 0.33 | |
| Insula | 8.1 ± 0.28 | |
| Limbic Lobe | 8.05 ± 0.28 | |
| Mesencephalon | 8.13 ± 0.3 | |
| Myelencephalon | 8.1 ± 0.3 | |
| Occipital Lobe | 8.51 ± 0.18 | |
| Parietal Lobe | 8.21 ± 0.24 | |
| Pontine Tegmentum | 8.23 ± 0.21 | |
| Striatum | 8.01 ± 0.25 | |
| Subthalamus | 8 ± 0.47 | |
| Temporal Lobe | 8.07 ± 0.27 | |
| Thalamus | 8.07 ± 0.2 | |
| White Matter | 8.42 ± 0.13 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cnot6l | CB | Cerebellum | 6.93 | |
| 7.35 | | |||
| Cnot6l | CTX | Cerebral cortex | 19.44 | |
| 14.18 | | |||
| Cnot6l | HIP | Hippocampal region | 30.19 | |
| 45.62 | | |||
| Cnot6l | HPF | Hippocampal formation | 28.67 | |
| 36.56 | | |||
| Cnot6l | HY | Hypothalamus | 21.39 | |
| 17.56 | | |||
| Cnot6l | LSX | Lateral septal complex | 12.62 | |
| 9.46 | | |||
| Cnot6l | MB | Midbrain | 5.15 | |
| 5.25 | | |||
| Cnot6l | MY | Medulla | 3.6 | |
| 4.39 | | |||
| Cnot6l | OLF | Olfactory bulb | 33.47 | |
| 30.12 | | |||
| Cnot6l | P | Pons | 6.14 | |
| 7.01 | | |||
| Cnot6l | PAL | Pallidum | 8.12 | |
| 7.43 | | |||
| Cnot6l | RHP | Retrohippocampal region | 25.98 | |
| 21.07 | | |||
| Cnot6l | sAMY | Striatum-like amygdalar nuclei | 21.98 | |
| 16.42 | | |||
| Cnot6l | STR | Striatum | 20.16 | |
| 15.53 | | |||
| Cnot6l | STRd | Striatum dorsal region | 15.7 | |
| 11.08 | | |||
| Cnot6l | STRv | Striatum ventral region | 37.39 | |
| 30.61 | | |||
| Cnot6l | TH | Thalamus | 8 | |
| 8.04 | |