AutismKB 2.0

Annotation Detail for FUT4


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Basic Information Top
Gene Symbol:FUT4 ( CD15,ELFT,FCT3A,FUC-TIV,FUTIV,LeX,SSEA-1 )
Gene Full Name: fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)
Band: 11q21
Quick LinksEntrez ID:2526; OMIM: 104230; Uniprot ID:FUT4_HUMAN; ENSEMBL ID: ENSG00000196371; HGNC ID: 4015
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus6 / 56401210
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult19 / 19391219
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult1 / 19391210 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor4 / 26384515
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal33 / 33603079
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal9 / 33603072
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder1 / 2975733
blood1 / 1234788
bone0 / 716550 
bone marrow2 / 4880140
brain3 / 11009892
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye3 / 21105414
heart3 / 8962633
intestine5 / 23447221
kidney1 / 2117774
larynx0 / 241450 
liver2 / 2077439
lung3 / 3369748
lymph0 / 442700 
lymph node1 / 9161010
mammary gland3 / 15327119
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach1 / 9661910
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow3 / 4880161
brain3 / 11009892
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine0 / 2344720 
kidney2 / 2117779
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209893_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.55
Adipocyte3.7
AdrenalCortex3.9
Adrenalgland3.1
Amygdala3.9
Appendix3.9
AtrioventricularNode2.9
BDCA4+_DentriticCells4.6
Bonemarrow4.05
BronchialEpithelialCells3.65
CD105+_Endothelial3.75
CD14+_Monocytes7
CD19+_BCells(neg._sel.)3.95
CD33+_Myeloid12.85
CD34+9.9
CD4+_Tcells4.05
CD56+_NKCells5.1
CD71+_EarlyErythroid3.45
CD8+_Tcells3.65
CardiacMyocytes6.45
Caudatenucleus3.3
Cerebellum3
CerebellumPeduncles4.2
CiliaryGanglion2.65
CingulateCortex3.75
Colorectaladenocarcinoma3.7
DorsalRootGanglion2.85
FetalThyroid3.55
Fetalbrain3.7
Fetalliver3.2
Fetallung3.15
GlobusPallidus2.7
Heart5
Hypothalamus4.05
Kidney2.95
Leukemia_chronicMyelogenousK-5623.35
Leukemia_promyelocytic-HL-603.25
Leukemialymphoblastic(MOLT-4)3
Liver4.85
Lung4.1
Lymphnode3.25
Lymphoma_burkitts(Daudi)4.7
Lymphoma_burkitts(Raji)5.15
MedullaOblongata3.4
OccipitalLobe3.3
OlfactoryBulb2.95
Ovary2.45
Pancreas2.95
PancreaticIslet4.05
ParietalLobe3.85
Pituitary4.3
Placenta3.85
Pons3.5
PrefrontalCortex4.65
Prostate4.3
Salivarygland2.95
SkeletalMuscle4.85
Skin2.85
SmoothMuscle4.75
Spinalcord3.95
SubthalamicNucleus3.4
SuperiorCervicalGanglion4.8
TemporalLobe3.4
Testis3.2
TestisGermCell3.1
TestisIntersitial3.05
TestisLeydigCell3.65
TestisSeminiferousTubule3.2
Thalamus3.75
Thymus2.95
Thyroid4.7
Tongue3.55
Tonsil3.6
Trachea3.1
TrigeminalGanglion3.7
Uterus3.1
UterusCorpus3.7
WholeBlood4.1
Wholebrain3.2
colon3.75
pineal_day4.72
pineal_night4.56
retina4.5
small_intestine3.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P295609
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.47 ± 0.95
Basal Forebrain2.14 ± 0.34
Basal Part of Pons2.03 ± 1.04
Cerebellar Cortex2.34 ± 0.62
Cerebellar Nuclei2.21 ± 0.71
Claustrum2.69 ± 0.82
Epithalamus2.19 ± 0.69
Frontal Lobe1.87 ± 0.63
Globus Pallidus2.12 ± 0.66
Hypothalamus2.01 ± 0.67
Insula1.98 ± 0.47
Limbic Lobe2.04 ± 0.65
Mesencephalon2.17 ± 0.67
Myelencephalon2.05 ± 0.66
Occipital Lobe2.08 ± 0.65
Parietal Lobe1.97 ± 0.74
Pontine Tegmentum2.07 ± 0.6
Striatum2.03 ± 0.76
Subthalamus2.11 ± 0.64
Temporal Lobe2.02 ± 0.67
Thalamus1.94 ± 0.61
White Matter3.27 ± 0.56
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Fut4CBCerebellum12.1
12.57
Fut4CTXCerebral cortex10.05
6.62
Fut4HIPHippocampal region5.31
4.32
Fut4HPFHippocampal formation7.49
5.97
Fut4HYHypothalamus4.27
2.83
Fut4LSXLateral septal complex2.94
2.91
Fut4MBMidbrain4.19
3.36
Fut4MYMedulla11.03
10.58
Fut4OLFOlfactory bulb17.4
12.8
Fut4PPons8.08
6.87
Fut4PALPallidum2.33
1.6
Fut4RHPRetrohippocampal region10.83
8.01
Fut4sAMYStriatum-like amygdalar nuclei1.41
1.01
Fut4STRStriatum2.18
1.43
Fut4STRdStriatum dorsal region2.15
1.39
Fut4STRvStriatum ventral region2.61
1.54
Fut4THThalamus2.22
1.49
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
FUT4_HUMAN_183 14 183 196 SLASNLFNWTLSYR PRIDE
FUT4_HUMAN_229 14 229 242 QGLVAWVVSHWDER PRIDE
FUT4_HUMAN_304 16 304 319 NALLAGAVPVVLGPDR PRIDE
FUT4_HUMAN_366 16 366 381 SYAVHITSFWDEPWCR PRIDE
FUT4_HUMAN_398 8 398 405 NLASWFER PRIDE
FUT4_HUMAN_5 11 5 15 WGSPTAAAGGR PRIDE
FUT4_HUMAN_97 5 97 101 LLTDR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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