Annotation Detail for FNDC5
Basic Information Top
| Gene Symbol: | FNDC5 ( FRCP2 ) |
|---|---|
| Gene Full Name: | fibronectin type III domain containing 5 |
| Band: | 1p35.1 |
| Quick Links | Entrez ID:252995; OMIM: 611906; Uniprot ID:FNDC5_HUMAN; ENSEMBL ID: ENSG00000160097; HGNC ID: 20240 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.524234
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 16 / 564012 | 28 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 33 / 1939121 | 17 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 9 / 106883 | 84 |  |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 80 / 3360307 | 23 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 33 / 1100989 | 29 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 20 / 211054 | 94 | |
| heart | 3 / 89626 | 33 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 29 / 336974 | 86 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 13 / 107715 | 120 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 2 / 330442 | 6 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_4787_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.21 ± 0.49 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.27 ± 0.27 | |
| Basal Part of Pons | 7.31 ± 0.28 | |
| Cerebellar Cortex | 7.42 ± 0.2 | |
| Cerebellar Nuclei | 7.52 ± 0.33 | |
| Claustrum | 5.76 ± 0.38 | |
| Epithalamus | 6.34 ± 0.35 | |
| Frontal Lobe | 6.78 ± 0.45 | |
| Globus Pallidus | 6.94 ± 0.36 | |
| Hypothalamus | 6.2 ± 0.21 | |
| Insula | 6.61 ± 0.52 | |
| Limbic Lobe | 6.74 ± 0.58 | |
| Mesencephalon | 6.67 ± 0.46 | |
| Myelencephalon | 6.85 ± 0.55 | |
| Occipital Lobe | 7.41 ± 0.41 | |
| Parietal Lobe | 7.1 ± 0.46 | |
| Pontine Tegmentum | 6.74 ± 0.53 | |
| Striatum | 6.13 ± 0.27 | |
| Subthalamus | 7.43 ± 0.15 | |
| Temporal Lobe | 6.82 ± 0.45 | |
| Thalamus | 7.44 ± 0.42 | |
| White Matter | 4.72 ± 0.37 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Fndc5 | CB | Cerebellum | 37.56 | |
| 66.71 | | |||
| Fndc5 | CTX | Cerebral cortex | 27.28 | |
| 22.95 | | |||
| Fndc5 | HIP | Hippocampal region | 28.75 | |
| 47.73 | | |||
| Fndc5 | HPF | Hippocampal formation | 23.97 | |
| 32.87 | | |||
| Fndc5 | HY | Hypothalamus | 16.61 | |
| 17.13 | | |||
| Fndc5 | LSX | Lateral septal complex | 13.37 | |
| 10.85 | | |||
| Fndc5 | MB | Midbrain | 34.43 | |
| 40.18 | | |||
| Fndc5 | MY | Medulla | 46.04 | |
| 61.85 | | |||
| Fndc5 | OLF | Olfactory bulb | 29.22 | |
| 30.49 | | |||
| Fndc5 | P | Pons | 36.46 | |
| 45.88 | | |||
| Fndc5 | PAL | Pallidum | 32.79 | |
| 42.9 | | |||
| Fndc5 | RHP | Retrohippocampal region | 17.5 | |
| 16.24 | | |||
| Fndc5 | sAMY | Striatum-like amygdalar nuclei | 9.63 | |
| 10.17 | | |||
| Fndc5 | STR | Striatum | 12.18 | |
| 10.58 | | |||
| Fndc5 | STRd | Striatum dorsal region | 11.6 | |
| 9.96 | | |||
| Fndc5 | STRv | Striatum ventral region | 15.74 | |
| 12.99 | | |||
| Fndc5 | TH | Thalamus | 42.49 | |
| 47.35 | |