Annotation Detail for WDR27
Basic Information Top
| Gene Symbol: | WDR27 ( MGC43690 ) |
|---|---|
| Gene Full Name: | WD repeat domain 27 |
| Band: | 6q27 |
| Quick Links | Entrez ID:253769; OMIM: NA; Uniprot ID:WDR27_HUMAN; ENSEMBL ID: ENSG00000184465; HGNC ID: 21248 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.131903
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 5 / 62319 | 80 |  |
| fetus | 37 / 564012 | 65 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 30 / 1939121 | 15 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 83 / 3360307 | 24 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 14 / 1100989 | 12 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 3 / 89626 | 33 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 11 / 330442 | 33 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_323_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.7 ± 1.07 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.92 ± 0.56 | |
| Basal Part of Pons | 1.72 ± 0.42 | |
| Cerebellar Cortex | 2.18 ± 0.69 | |
| Cerebellar Nuclei | 2.24 ± 0.78 | |
| Claustrum | 2.56 ± 0.83 | |
| Epithalamus | 3.16 ± 0.75 | |
| Frontal Lobe | 2.02 ± 0.75 | |
| Globus Pallidus | 2.31 ± 0.49 | |
| Hypothalamus | 2.28 ± 0.5 | |
| Insula | 1.56 ± 0.52 | |
| Limbic Lobe | 2.08 ± 0.65 | |
| Mesencephalon | 2.28 ± 0.78 | |
| Myelencephalon | 2.22 ± 0.71 | |
| Occipital Lobe | 2.32 ± 0.55 | |
| Parietal Lobe | 2.07 ± 0.74 | |
| Pontine Tegmentum | 2.13 ± 0.66 | |
| Striatum | 2.67 ± 0.74 | |
| Subthalamus | 2.43 ± 0.16 | |
| Temporal Lobe | 1.99 ± 0.73 | |
| Thalamus | 2.01 ± 0.68 | |
| White Matter | 2.55 ± 0.29 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Wdr27 | CB | Cerebellum | 0.39 | |
| 0.96 | | |||
| Wdr27 | CTX | Cerebral cortex | 0.59 | |
| 0.9 | | |||
| Wdr27 | HIP | Hippocampal region | 0.63 | |
| 0.93 | | |||
| Wdr27 | HPF | Hippocampal formation | 0.48 | |
| 0.76 | | |||
| Wdr27 | HY | Hypothalamus | 0.16 | |
| 0.19 | | |||
| Wdr27 | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| Wdr27 | MB | Midbrain | 0.26 | |
| 0.59 | | |||
| Wdr27 | MY | Medulla | 0.45 | |
| 0.62 | | |||
| Wdr27 | OLF | Olfactory bulb | 1.28 | |
| 1.53 | | |||
| Wdr27 | P | Pons | 0.33 | |
| 0.52 | | |||
| Wdr27 | PAL | Pallidum | 0.21 | |
| 0.27 | | |||
| Wdr27 | RHP | Retrohippocampal region | 0.19 | |
| 0.29 | | |||
| Wdr27 | sAMY | Striatum-like amygdalar nuclei | 0.75 | |
| 0.97 | | |||
| Wdr27 | STR | Striatum | 0.38 | |
| 0.37 | | |||
| Wdr27 | STRd | Striatum dorsal region | 0.33 | |
| 0.33 | | |||
| Wdr27 | STRv | Striatum ventral region | 0.63 | |
| 0.48 | | |||
| Wdr27 | TH | Thalamus | 0.19 | |
| 0.31 | |