Annotation Detail for METAP1D
Basic Information Top
| Gene Symbol: | METAP1D ( MAP1D,Metap1l ) |
|---|---|
| Gene Full Name: | methionyl aminopeptidase type 1D (mitochondrial) |
| Band: | 2q31.1 |
| Quick Links | Entrez ID:254042; OMIM: 610267; Uniprot ID:AMP1D_HUMAN; ENSEMBL ID: ENSG00000172878; HGNC ID: 32583 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.298250
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 16 / 1939121 | 8 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 24 / 3360307 | 7 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_7880_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.05 ± 1.03 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.7 ± 0.55 | |
| Basal Part of Pons | 2.71 ± 0.84 | |
| Cerebellar Cortex | 2.48 ± 0.57 | |
| Cerebellar Nuclei | 2.95 ± 0.58 | |
| Claustrum | 3.16 ± 0.71 | |
| Epithalamus | 2.58 ± 0.76 | |
| Frontal Lobe | 2.68 ± 0.76 | |
| Globus Pallidus | 3.37 ± 0.77 | |
| Hypothalamus | 2.7 ± 0.6 | |
| Insula | 2.38 ± 0.77 | |
| Limbic Lobe | 2.64 ± 0.63 | |
| Mesencephalon | 2.89 ± 0.77 | |
| Myelencephalon | 2.75 ± 0.64 | |
| Occipital Lobe | 2.91 ± 0.77 | |
| Parietal Lobe | 2.61 ± 0.78 | |
| Pontine Tegmentum | 2.7 ± 0.63 | |
| Striatum | 2.99 ± 0.64 | |
| Subthalamus | 2.72 ± 0.67 | |
| Temporal Lobe | 2.66 ± 0.66 | |
| Thalamus | 2.81 ± 0.56 | |
| White Matter | 3.29 ± 0.61 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Metapl1 | CB | Cerebellum | 32.83 | |
| 38.87 | | |||
| Metapl1 | CTX | Cerebral cortex | 68.7 | |
| 47.87 | | |||
| Metapl1 | HIP | Hippocampal region | 56.2 | |
| 81.47 | | |||
| Metapl1 | HPF | Hippocampal formation | 59.15 | |
| 69.87 | | |||
| Metapl1 | HY | Hypothalamus | 61 | |
| 48.66 | | |||
| Metapl1 | LSX | Lateral septal complex | 57.94 | |
| 40.89 | | |||
| Metapl1 | MB | Midbrain | 41.64 | |
| 36.38 | | |||
| Metapl1 | MY | Medulla | 38.27 | |
| 43.98 | | |||
| Metapl1 | OLF | Olfactory bulb | 98.35 | |
| 99.44 | | |||
| Metapl1 | P | Pons | 42.44 | |
| 46.31 | | |||
| Metapl1 | PAL | Pallidum | 57.7 | |
| 49.88 | | |||
| Metapl1 | RHP | Retrohippocampal region | 66.3 | |
| 50.69 | | |||
| Metapl1 | sAMY | Striatum-like amygdalar nuclei | 99.4 | |
| 72.88 | | |||
| Metapl1 | STR | Striatum | 72.25 | |
| 50.66 | | |||
| Metapl1 | STRd | Striatum dorsal region | 66.07 | |
| 45.73 | | |||
| Metapl1 | STRv | Striatum ventral region | 79.36 | |
| 54.04 | | |||
| Metapl1 | TH | Thalamus | 51.12 | |
| 41.66 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00096583 | 16 | 90 | 105 | NEDQIQGLHQACQLAR | Peptide Atlas |