Annotation Detail for C10orf47
Basic Information Top
| Gene Symbol: | C10orf47 ( MGC35403 ) |
|---|---|
| Gene Full Name: | chromosome 10 open reading frame 47 |
| Band: | 10p14 |
| Quick Links | Entrez ID:254427; OMIM: NA; Uniprot ID:CJ047_HUMAN; ENSEMBL ID: ENSG00000148426; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.435775
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 20 / 1939121 | 10 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 33 / 3360307 | 9 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 8 / 90257 | 88 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 2 / 1100989 | 1 |  |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 2 / 336974 | 5 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P352402
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.57 ± 0.66 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.2 ± 0.27 | |
| Basal Part of Pons | 5.35 ± 0.24 | |
| Cerebellar Cortex | 5.51 ± 0.39 | |
| Cerebellar Nuclei | 5.74 ± 0.46 | |
| Claustrum | 5.76 ± 0.81 | |
| Epithalamus | 4.99 ± 0.64 | |
| Frontal Lobe | 5.32 ± 0.43 | |
| Globus Pallidus | 5.67 ± 0.44 | |
| Hypothalamus | 5.32 ± 0.47 | |
| Insula | 5.25 ± 0.26 | |
| Limbic Lobe | 5.4 ± 0.51 | |
| Mesencephalon | 5.44 ± 0.57 | |
| Myelencephalon | 5.42 ± 0.52 | |
| Occipital Lobe | 5.64 ± 0.62 | |
| Parietal Lobe | 5.21 ± 0.52 | |
| Pontine Tegmentum | 5.43 ± 0.4 | |
| Striatum | 5.61 ± 0.55 | |
| Subthalamus | 5.52 ± 0.25 | |
| Temporal Lobe | 5.18 ± 0.42 | |
| Thalamus | 5.6 ± 0.47 | |
| White Matter | 5.85 ± 0.55 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 5430407P10Rik | CB | Cerebellum | 26.99 | |
| 38.8 | | |||
| 5430407P10Rik | CTX | Cerebral cortex | 32.38 | |
| 24.17 | | |||
| 5430407P10Rik | HIP | Hippocampal region | 20.61 | |
| 25.25 | | |||
| 5430407P10Rik | HPF | Hippocampal formation | 25 | |
| 25.97 | | |||
| 5430407P10Rik | HY | Hypothalamus | 3.84 | |
| 2.83 | | |||
| 5430407P10Rik | LSX | Lateral septal complex | 2.88 | |
| 1.88 | | |||
| 5430407P10Rik | MB | Midbrain | 7.5 | |
| 6.65 | | |||
| 5430407P10Rik | MY | Medulla | 10.98 | |
| 11.75 | | |||
| 5430407P10Rik | OLF | Olfactory bulb | 30.31 | |
| 32.35 | | |||
| 5430407P10Rik | P | Pons | 5.55 | |
| 5.63 | | |||
| 5430407P10Rik | PAL | Pallidum | 11.97 | |
| 10.46 | | |||
| 5430407P10Rik | RHP | Retrohippocampal region | 30.73 | |
| 26.58 | | |||
| 5430407P10Rik | sAMY | Striatum-like amygdalar nuclei | 21.74 | |
| 14.63 | | |||
| 5430407P10Rik | STR | Striatum | 23.1 | |
| 17.1 | | |||
| 5430407P10Rik | STRd | Striatum dorsal region | 28.67 | |
| 21.76 | | |||
| 5430407P10Rik | STRv | Striatum ventral region | 13.56 | |
| 9.79 | | |||
| 5430407P10Rik | TH | Thalamus | 10.49 | |
| 9.25 | |