AutismKB 2.0

Annotation Detail for LPCAT4


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Basic Information Top
Gene Symbol:LPCAT4 ( AGPAT7,AYTL3,FLJ10257,LPAAT-eta,LPEAT2 )
Gene Full Name: lysophosphatidylcholine acyltransferase 4
Band: 15q14
Quick LinksEntrez ID:254531; OMIM: 612039; Uniprot ID:LPCT4_HUMAN; ENSEMBL ID: ENSG00000176454; HGNC ID: 30059
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst7 / 62319112
fetus24 / 56401242
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult66 / 193912134
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor14 / 114246122
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor2 / 2638457
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor6 / 10312758
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal135 / 336030740
ovarian tumor4 / 7668252
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood4 / 12347832
bone3 / 7165541
bone marrow0 / 488010 
brain53 / 110098948
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue12 / 21572255
esophagus1 / 2020949
eye4 / 21105418
heart4 / 8962644
intestine25 / 234472106
kidney1 / 2117774
larynx0 / 241450 
liver3 / 20774314
lung25 / 33697474
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth0 / 670520 
muscle1 / 1077159
nerve1 / 1576863
ovary5 / 10205148
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta3 / 28082510
prostate0 / 1893450 
salivary gland0 / 201550 
skin7 / 21057433
spleen0 / 539520 
stomach1 / 9661910
testis1 / 3304423
thymus5 / 8113161
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213078_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.85
Adipocyte3.8
AdrenalCortex4
Adrenalgland3.25
Amygdala9.4
Appendix4.95
AtrioventricularNode2.95
BDCA4+_DentriticCells5.6
Bonemarrow3.8
BronchialEpithelialCells3.85
CD105+_Endothelial4
CD14+_Monocytes4.15
CD19+_BCells(neg._sel.)4.15
CD33+_Myeloid5
CD34+5.1
CD4+_Tcells7.35
CD56+_NKCells4.7
CD71+_EarlyErythroid3.55
CD8+_Tcells5.8
CardiacMyocytes4.85
Caudatenucleus22.95
Cerebellum16.05
CerebellumPeduncles32.2
CiliaryGanglion5.2
CingulateCortex21.3
Colorectaladenocarcinoma3.85
DorsalRootGanglion3.1
FetalThyroid3.75
Fetalbrain10.1
Fetalliver3.35
Fetallung3.3
GlobusPallidus12.6
Heart5.15
Hypothalamus9.4
Kidney3.15
Leukemia_chronicMyelogenousK-5623.5
Leukemia_promyelocytic-HL-607.75
Leukemialymphoblastic(MOLT-4)4.5
Liver5.2
Lung4.65
Lymphnode4.55
Lymphoma_burkitts(Daudi)4.95
Lymphoma_burkitts(Raji)6.25
MedullaOblongata15.65
OccipitalLobe8.8
OlfactoryBulb4.05
Ovary2.55
Pancreas3.1
PancreaticIslet4.15
ParietalLobe8.9
Pituitary4.45
Placenta4.35
Pons8.55
PrefrontalCortex15.45
Prostate4.55
Salivarygland3
SkeletalMuscle4.4
Skin3.4
SmoothMuscle4.35
Spinalcord4.05
SubthalamicNucleus6.45
SuperiorCervicalGanglion7.25
TemporalLobe16.9
Testis3.25
TestisGermCell3.1
TestisIntersitial3.2
TestisLeydigCell3.75
TestisSeminiferousTubule3.25
Thalamus16.25
Thymus3.1
Thyroid4.8
Tongue3.85
Tonsil3.75
Trachea3.3
TrigeminalGanglion3.9
Uterus3.2
UterusCorpus3.5
WholeBlood4.95
Wholebrain21.35
colon3.95
pineal_day4.88
pineal_night4.64
retina4.625
small_intestine3.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14864_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.93 ± 0.41
Basal Forebrain6.03 ± 0.21
Basal Part of Pons6.77 ± 0.3
Cerebellar Cortex6.39 ± 0.27
Cerebellar Nuclei5.77 ± 0.66
Claustrum5.92 ± 0.73
Epithalamus4.66 ± 0.88
Frontal Lobe5.75 ± 0.47
Globus Pallidus4.89 ± 0.63
Hypothalamus5.25 ± 0.7
Insula5.69 ± 0.4
Limbic Lobe6.04 ± 0.69
Mesencephalon5.65 ± 0.61
Myelencephalon5.91 ± 0.71
Occipital Lobe6.84 ± 0.87
Parietal Lobe6.12 ± 0.44
Pontine Tegmentum5.78 ± 0.65
Striatum6.36 ± 0.54
Subthalamus5.71 ± 0.54
Temporal Lobe5.79 ± 0.5
Thalamus6.22 ± 0.47
White Matter3.26 ± 0.49
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Agpat7CBCerebellum55.86
100
Agpat7CTXCerebral cortex100
100
Agpat7HIPHippocampal region100
100
Agpat7HPFHippocampal formation100
100
Agpat7HYHypothalamus100
100
Agpat7LSXLateral septal complex100
100
Agpat7MBMidbrain100
100
Agpat7MYMedulla100
100
Agpat7OLFOlfactory bulb100
100
Agpat7PPons100
100
Agpat7PALPallidum100
100
Agpat7RHPRetrohippocampal region100
100
Agpat7sAMYStriatum-like amygdalar nuclei100
100
Agpat7STRStriatum100
100
Agpat7STRdStriatum dorsal region100
100
Agpat7STRvStriatum ventral region100
100
Agpat7THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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