Annotation Detail for TMCO4
Basic Information Top
| Gene Symbol: | TMCO4 ( DKFZp686C23231,RP5-1056L3.6 ) |
|---|---|
| Gene Full Name: | transmembrane and coiled-coil domains 4 |
| Band: | 1p36.13 |
| Quick Links | Entrez ID:255104; OMIM: NA; Uniprot ID:TMCO4_HUMAN; ENSEMBL ID: ENSG00000162542; HGNC ID: 27393 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.656313
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 54 / 1939121 | 27 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 7 / 103127 | 67 |  |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 52 / 3360307 | 15 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_6069_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.93 ± 0.91 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.77 ± 1.06 | |
| Basal Part of Pons | 1.23 ± 0.48 | |
| Cerebellar Cortex | 1.18 ± 0.6 | |
| Cerebellar Nuclei | 1.75 ± 0.84 | |
| Claustrum | 2.27 ± 0.9 | |
| Epithalamus | 1.62 ± 0.83 | |
| Frontal Lobe | 1.3 ± 0.63 | |
| Globus Pallidus | 2.18 ± 0.39 | |
| Hypothalamus | 1.57 ± 0.77 | |
| Insula | 1.26 ± 0.48 | |
| Limbic Lobe | 1.42 ± 0.63 | |
| Mesencephalon | 1.67 ± 0.75 | |
| Myelencephalon | 1.55 ± 0.68 | |
| Occipital Lobe | 1.78 ± 0.98 | |
| Parietal Lobe | 1.46 ± 0.71 | |
| Pontine Tegmentum | 1.51 ± 0.73 | |
| Striatum | 1.97 ± 0.71 | |
| Subthalamus | 1.54 ± 0.7 | |
| Temporal Lobe | 1.45 ± 0.78 | |
| Thalamus | 1.49 ± 0.65 | |
| White Matter | 1.69 ± 0.12 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tmco4 | CB | Cerebellum | 1.52 | |
| 2.3 | | |||
| Tmco4 | CTX | Cerebral cortex | 3.6 | |
| 2.36 | | |||
| Tmco4 | HIP | Hippocampal region | 2.58 | |
| 2.15 | | |||
| Tmco4 | HPF | Hippocampal formation | 3.84 | |
| 3.01 | | |||
| Tmco4 | HY | Hypothalamus | 2.2 | |
| 2.94 | | |||
| Tmco4 | LSX | Lateral septal complex | 0.27 | |
| 0.22 | | |||
| Tmco4 | MB | Midbrain | 1.24 | |
| 3.07 | | |||
| Tmco4 | MY | Medulla | 3.19 | |
| 4.61 | | |||
| Tmco4 | OLF | Olfactory bulb | 9.63 | |
| 7.11 | | |||
| Tmco4 | P | Pons | 4.35 | |
| 7.19 | | |||
| Tmco4 | PAL | Pallidum | 1.22 | |
| 1.14 | | |||
| Tmco4 | RHP | Retrohippocampal region | 7.59 | |
| 5.02 | | |||
| Tmco4 | sAMY | Striatum-like amygdalar nuclei | 3.18 | |
| 2.35 | | |||
| Tmco4 | STR | Striatum | 2.2 | |
| 1.85 | | |||
| Tmco4 | STRd | Striatum dorsal region | 2.18 | |
| 1.89 | | |||
| Tmco4 | STRv | Striatum ventral region | 2.39 | |
| 2.03 | | |||
| Tmco4 | TH | Thalamus | 0.71 | |
| 0.77 | |