Annotation Detail for NPNT
Basic Information Top
| Gene Symbol: | NPNT ( EGFL6L,POEM ) |
|---|---|
| Gene Full Name: | nephronectin |
| Band: | 4q24 |
| Quick Links | Entrez ID:255743; OMIM: 610306; Uniprot ID:NPNT_HUMAN; ENSEMBL ID: ENSG00000168743; HGNC ID: 27405 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.518921
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 12 / 70761 | 169 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 32 / 564012 | 56 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 83 / 1939121 | 42 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 2 / 263845 | 7 |  |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 25 / 136302 | 183 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 139 / 3360307 | 41 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 9 / 1100989 | 8 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 11 / 16212 | 678 |  |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 6 / 211054 | 28 | |
| heart | 9 / 89626 | 100 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 19 / 336974 | 56 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 7 / 330442 | 21 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 26 / 47473 | 547 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 5 / 52413 | 95 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 11 / 51780 | 212 | |
Microarray in - Probe name: A_32_P174978
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.98 ± 0.57 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.21 ± 0.66 | |
| Basal Part of Pons | 2.49 ± 0.39 | |
| Cerebellar Cortex | 2.66 ± 0.38 | |
| Cerebellar Nuclei | 2.93 ± 0.72 | |
| Claustrum | 3.58 ± 0.97 | |
| Epithalamus | 3.8 ± 0.58 | |
| Frontal Lobe | 3.38 ± 0.82 | |
| Globus Pallidus | 3.98 ± 1.1 | |
| Hypothalamus | 3.64 ± 0.69 | |
| Insula | 3.57 ± 0.9 | |
| Limbic Lobe | 3.49 ± 0.98 | |
| Mesencephalon | 4.34 ± 0.93 | |
| Myelencephalon | 3.46 ± 0.87 | |
| Occipital Lobe | 3.61 ± 1.39 | |
| Parietal Lobe | 3.25 ± 0.82 | |
| Pontine Tegmentum | 3.24 ± 0.73 | |
| Striatum | 4.21 ± 0.84 | |
| Subthalamus | 4.17 ± 0.72 | |
| Temporal Lobe | 3.21 ± 0.84 | |
| Thalamus | 3.15 ± 0.66 | |
| White Matter | 2.96 ± 0.53 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Npnt | CB | Cerebellum | 4.1 | |
| 4.93 | | |||
| Npnt | CTX | Cerebral cortex | 15.02 | |
| 13.95 | | |||
| Npnt | HIP | Hippocampal region | 13.18 | |
| 19.92 | | |||
| Npnt | HPF | Hippocampal formation | 9.19 | |
| 12.14 | | |||
| Npnt | HY | Hypothalamus | 2.03 | |
| 1.49 | | |||
| Npnt | LSX | Lateral septal complex | 0.35 | |
| 0.34 | | |||
| Npnt | MB | Midbrain | 7.3 | |
| 8.67 | | |||
| Npnt | MY | Medulla | 1.79 | |
| 1.74 | | |||
| Npnt | OLF | Olfactory bulb | 2.41 | |
| 1.99 | | |||
| Npnt | P | Pons | 2.75 | |
| 3.49 | | |||
| Npnt | PAL | Pallidum | 1.06 | |
| 1.23 | | |||
| Npnt | RHP | Retrohippocampal region | 3.68 | |
| 3.23 | | |||
| Npnt | sAMY | Striatum-like amygdalar nuclei | 0.94 | |
| 0.8 | | |||
| Npnt | STR | Striatum | 0.77 | |
| 0.84 | | |||
| Npnt | STRd | Striatum dorsal region | 0.9 | |
| 1.05 | | |||
| Npnt | STRv | Striatum ventral region | 0.31 | |
| 0.32 | | |||
| Npnt | TH | Thalamus | 1.14 | |
| 1.21 | |