Annotation Detail for PAN3
Basic Information Top
| Gene Symbol: | PAN3 ( - ) |
|---|---|
| Gene Full Name: | PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) |
| Band: | 13q12.2 |
| Quick Links | Entrez ID:255967; OMIM: NA; Uniprot ID:PAN3_HUMAN; ENSEMBL ID: ENSG00000152520; HGNC ID: 29991 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.645015
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 17 / 564012 | 30 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 49 / 1939121 | 25 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 84 / 3360307 | 24 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 1 / 16212 | 61 |  |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 4 / 96619 | 41 | |
| testis | 10 / 330442 | 30 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P385938
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.94 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.91 ± 0.44 | |
| Basal Part of Pons | 4.02 ± 0.51 | |
| Cerebellar Cortex | 4.64 ± 0.33 | |
| Cerebellar Nuclei | 4.18 ± 1.11 | |
| Claustrum | 3.44 ± 0.77 | |
| Epithalamus | 4.64 ± 0.48 | |
| Frontal Lobe | 3.92 ± 0.65 | |
| Globus Pallidus | 4.1 ± 0.58 | |
| Hypothalamus | 3.83 ± 0.8 | |
| Insula | 4.07 ± 0.63 | |
| Limbic Lobe | 3.93 ± 0.55 | |
| Mesencephalon | 4.17 ± 0.56 | |
| Myelencephalon | 3.91 ± 0.63 | |
| Occipital Lobe | 3.99 ± 0.5 | |
| Parietal Lobe | 3.89 ± 0.59 | |
| Pontine Tegmentum | 4.03 ± 0.59 | |
| Striatum | 3.85 ± 0.56 | |
| Subthalamus | 3.85 ± 0.31 | |
| Temporal Lobe | 4.05 ± 0.52 | |
| Thalamus | 3.85 ± 0.62 | |
| White Matter | 5.03 ± 0.27 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Pan3 | CB | Cerebellum | 42.31 | |
| 46.86 | | |||
| Pan3 | CTX | Cerebral cortex | 32.49 | |
| 23.22 | | |||
| Pan3 | HIP | Hippocampal region | 34.73 | |
| 52.34 | | |||
| Pan3 | HPF | Hippocampal formation | 34.88 | |
| 42.59 | | |||
| Pan3 | HY | Hypothalamus | 23.06 | |
| 19.61 | | |||
| Pan3 | LSX | Lateral septal complex | 13.2 | |
| 9.57 | | |||
| Pan3 | MB | Midbrain | 11.37 | |
| 9.95 | | |||
| Pan3 | MY | Medulla | 21.65 | |
| 22 | | |||
| Pan3 | OLF | Olfactory bulb | 71.95 | |
| 56.15 | | |||
| Pan3 | P | Pons | 19.01 | |
| 19.98 | | |||
| Pan3 | PAL | Pallidum | 19.35 | |
| 15.48 | | |||
| Pan3 | RHP | Retrohippocampal region | 35.51 | |
| 28.33 | | |||
| Pan3 | sAMY | Striatum-like amygdalar nuclei | 37.94 | |
| 27.47 | | |||
| Pan3 | STR | Striatum | 23.42 | |
| 16.57 | | |||
| Pan3 | STRd | Striatum dorsal region | 15.99 | |
| 11.17 | | |||
| Pan3 | STRv | Striatum ventral region | 43.55 | |
| 28.99 | | |||
| Pan3 | TH | Thalamus | 15.53 | |
| 14.49 | |