Annotation Detail for SERINC5
Basic Information Top
| Gene Symbol: | SERINC5 ( C5orf12,TPO1 ) |
|---|---|
| Gene Full Name: | serine incorporator 5 |
| Band: | 5q14.1 |
| Quick Links | Entrez ID:256987; OMIM: NA; Uniprot ID:SERC5_HUMAN; ENSEMBL ID: ENSG00000164300; HGNC ID: 18825 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.288232
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 78 / 1939121 | 40 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 4 / 12794 | 312 |  |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 95 / 3360307 | 28 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 11 / 102680 | 107 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 17 / 1100989 | 15 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 2 / 89626 | 22 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 13 / 336974 | 38 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 17 / 189345 | 89 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 11 / 330442 | 33 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P423457
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.28 ± 0.38 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.91 ± 0.4 | |
| Basal Part of Pons | 6.52 ± 0.46 | |
| Cerebellar Cortex | 6.29 ± 0.21 | |
| Cerebellar Nuclei | 7.39 ± 0.47 | |
| Claustrum | 6.24 ± 0.48 | |
| Epithalamus | 6.77 ± 0.71 | |
| Frontal Lobe | 6.66 ± 0.53 | |
| Globus Pallidus | 7.9 ± 0.25 | |
| Hypothalamus | 6.5 ± 0.35 | |
| Insula | 6.41 ± 0.37 | |
| Limbic Lobe | 6.43 ± 0.53 | |
| Mesencephalon | 6.85 ± 0.47 | |
| Myelencephalon | 6.78 ± 0.56 | |
| Occipital Lobe | 6.72 ± 0.5 | |
| Parietal Lobe | 6.61 ± 0.53 | |
| Pontine Tegmentum | 6.85 ± 0.51 | |
| Striatum | 7.22 ± 0.46 | |
| Subthalamus | 6.69 ± 0.14 | |
| Temporal Lobe | 6.65 ± 0.41 | |
| Thalamus | 7.17 ± 0.36 | |
| White Matter | 9.11 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Serinc5 | CB | Cerebellum | 54.43 | |
| 64.74 | | |||
| Serinc5 | CTX | Cerebral cortex | 81.48 | |
| 65.56 | | |||
| Serinc5 | HIP | Hippocampal region | 72.24 | |
| 98.7 | | |||
| Serinc5 | HPF | Hippocampal formation | 78.19 | |
| 89.57 | | |||
| Serinc5 | HY | Hypothalamus | 80.34 | |
| 71.83 | | |||
| Serinc5 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Serinc5 | MB | Midbrain | 100 | |
| 90.12 | | |||
| Serinc5 | MY | Medulla | 100 | |
| 96.31 | | |||
| Serinc5 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Serinc5 | P | Pons | 100 | |
| 98.99 | | |||
| Serinc5 | PAL | Pallidum | 83.33 | |
| 78.57 | | |||
| Serinc5 | RHP | Retrohippocampal region | 90.96 | |
| 78.1 | | |||
| Serinc5 | sAMY | Striatum-like amygdalar nuclei | 68.19 | |
| 57.85 | | |||
| Serinc5 | STR | Striatum | 84.44 | |
| 73.79 | | |||
| Serinc5 | STRd | Striatum dorsal region | 82.15 | |
| 71.86 | | |||
| Serinc5 | STRv | Striatum ventral region | 74.64 | |
| 60.65 | | |||
| Serinc5 | TH | Thalamus | 72.99 | |
| 61.58 | |