Annotation Detail for ARHGAP30
Basic Information Top
| Gene Symbol: | ARHGAP30 ( FLJ00267,FLJ44128 ) |
|---|---|
| Gene Full Name: | Rho GTPase activating protein 30 |
| Band: | 1q23.3 |
| Quick Links | Entrez ID:257106; OMIM: NA; Uniprot ID:RHG30_HUMAN; ENSEMBL ID: ENSG00000186517; HGNC ID: 27414 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.389374
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 14 / 564012 | 24 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 |  |
| adult | 68 / 1939121 | 35 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 19 / 95842 | 198 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 118 / 3360307 | 35 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 32 / 123478 | 259 |  |
| bone | 0 / 71655 | 0 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 9 / 1100989 | 8 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 10 / 149255 | 66 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 3 / 89626 | 33 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 9 / 336974 | 26 | |
| lymph | 6 / 44270 | 135 | |
| lymph node | 12 / 91610 | 130 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 19 / 53952 | 352 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 24 / 81131 | 295 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P911231
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.22 ± 1.23 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.57 ± 0.24 | |
| Basal Part of Pons | 1.57 ± 0.71 | |
| Cerebellar Cortex | 1.92 ± 0.79 | |
| Cerebellar Nuclei | 1.95 ± 0.68 | |
| Claustrum | 2.62 ± 0.78 | |
| Epithalamus | 1.56 ± 0.84 | |
| Frontal Lobe | 1.6 ± 0.89 | |
| Globus Pallidus | 2.05 ± 0.62 | |
| Hypothalamus | 1.76 ± 0.91 | |
| Insula | 1.41 ± 0.61 | |
| Limbic Lobe | 1.66 ± 0.83 | |
| Mesencephalon | 1.89 ± 0.96 | |
| Myelencephalon | 1.76 ± 0.81 | |
| Occipital Lobe | 1.69 ± 0.73 | |
| Parietal Lobe | 1.85 ± 0.99 | |
| Pontine Tegmentum | 1.75 ± 0.75 | |
| Striatum | 1.69 ± 0.81 | |
| Subthalamus | 1.82 ± 0.67 | |
| Temporal Lobe | 1.67 ± 0.91 | |
| Thalamus | 1.66 ± 0.71 | |
| White Matter | 3.45 ± 1.79 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Arhgap30 | CB | Cerebellum | 0.38 | |
| 0.56 | | |||
| Arhgap30 | CTX | Cerebral cortex | 0.25 | |
| 0.36 | | |||
| Arhgap30 | HIP | Hippocampal region | 0.13 | |
| 0.29 | | |||
| Arhgap30 | HPF | Hippocampal formation | 0.2 | |
| 0.39 | | |||
| Arhgap30 | HY | Hypothalamus | 0.03 | |
| 0.03 | | |||
| Arhgap30 | LSX | Lateral septal complex | 0.16 | |
| 0.09 | | |||
| Arhgap30 | MB | Midbrain | 0.16 | |
| 0.42 | | |||
| Arhgap30 | MY | Medulla | 0.35 | |
| 0.52 | | |||
| Arhgap30 | OLF | Olfactory bulb | 0.32 | |
| 0.28 | | |||
| Arhgap30 | P | Pons | 0.14 | |
| 0.32 | | |||
| Arhgap30 | PAL | Pallidum | 0.11 | |
| 0.14 | | |||
| Arhgap30 | RHP | Retrohippocampal region | 0.29 | |
| 0.53 | | |||
| Arhgap30 | sAMY | Striatum-like amygdalar nuclei | 0.07 | |
| 0.03 | | |||
| Arhgap30 | STR | Striatum | 0.21 | |
| 0.22 | | |||
| Arhgap30 | STRd | Striatum dorsal region | 0.26 | |
| 0.29 | | |||
| Arhgap30 | STRv | Striatum ventral region | 0.14 | |
| 0.07 | | |||
| Arhgap30 | TH | Thalamus | 0.13 | |
| 0.32 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00002069 | 19 | 749 | 767 | EIEREEDEQREEAQVEAGR | Peptide Atlas |