Annotation Detail for RNF214
Basic Information Top
| Gene Symbol: | RNF214 ( DKFZp547C195 ) |
|---|---|
| Gene Full Name: | ring finger protein 214 |
| Band: | 11q23.3 |
| Quick Links | Entrez ID:257160; OMIM: NA; Uniprot ID:RN214_HUMAN; ENSEMBL ID: ENSG00000167257; HGNC ID: 25335 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591934
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 54 / 1939121 | 27 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 52 / 3360307 | 15 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 16 / 1100989 | 14 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 1 / 89626 | 11 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 6 / 330442 | 18 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P32520
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.07 ± 0.71 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.51 ± 0.27 | |
| Basal Part of Pons | 5.79 ± 0.33 | |
| Cerebellar Cortex | 5.58 ± 0.35 | |
| Cerebellar Nuclei | 5.55 ± 0.38 | |
| Claustrum | 5.11 ± 0.59 | |
| Epithalamus | 5.48 ± 0.41 | |
| Frontal Lobe | 5.54 ± 0.37 | |
| Globus Pallidus | 5.81 ± 0.22 | |
| Hypothalamus | 5.48 ± 0.46 | |
| Insula | 5.5 ± 0.68 | |
| Limbic Lobe | 5.2 ± 0.55 | |
| Mesencephalon | 5.46 ± 0.44 | |
| Myelencephalon | 5.34 ± 0.48 | |
| Occipital Lobe | 5.11 ± 0.48 | |
| Parietal Lobe | 5.51 ± 0.48 | |
| Pontine Tegmentum | 5.37 ± 0.43 | |
| Striatum | 4.96 ± 0.38 | |
| Subthalamus | 5.58 ± 0.87 | |
| Temporal Lobe | 5.46 ± 0.35 | |
| Thalamus | 5.54 ± 0.31 | |
| White Matter | 5.94 ± 0.42 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| D130054N24Rik | CB | Cerebellum | 26.43 | |
| 34.88 | | |||
| D130054N24Rik | CTX | Cerebral cortex | 100 | |
| 85.3 | | |||
| D130054N24Rik | HIP | Hippocampal region | 46.61 | |
| 58.28 | | |||
| D130054N24Rik | HPF | Hippocampal formation | 52.58 | |
| 55.82 | | |||
| D130054N24Rik | HY | Hypothalamus | 30.09 | |
| 25.2 | | |||
| D130054N24Rik | LSX | Lateral septal complex | 28.31 | |
| 21.44 | | |||
| D130054N24Rik | MB | Midbrain | 38.56 | |
| 37.73 | | |||
| D130054N24Rik | MY | Medulla | 29.1 | |
| 32.98 | | |||
| D130054N24Rik | OLF | Olfactory bulb | 74.15 | |
| 65.21 | | |||
| D130054N24Rik | P | Pons | 30.02 | |
| 32.98 | | |||
| D130054N24Rik | PAL | Pallidum | 38.26 | |
| 37.75 | | |||
| D130054N24Rik | RHP | Retrohippocampal region | 63.63 | |
| 53.62 | | |||
| D130054N24Rik | sAMY | Striatum-like amygdalar nuclei | 73.65 | |
| 57.87 | | |||
| D130054N24Rik | STR | Striatum | 43.95 | |
| 33.97 | | |||
| D130054N24Rik | STRd | Striatum dorsal region | 39.85 | |
| 30.52 | | |||
| D130054N24Rik | STRv | Striatum ventral region | 46.86 | |
| 35.78 | | |||
| D130054N24Rik | TH | Thalamus | 41.55 | |
| 37.04 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00498695 | 27 | 483 | 509 | SLSFPILNPALSQPSQPSSPLPGSHGR | Peptide Atlas |