Annotation Detail for NEGR1
Basic Information Top
| Gene Symbol: | NEGR1 ( DMML2433,IGLON4,KILON,MGC46680,Ntra ) |
|---|---|
| Gene Full Name: | neuronal growth regulator 1 |
| Band: | 1p31.1 |
| Quick Links | Entrez ID:257194; OMIM: 613173; Uniprot ID:NEGR1_HUMAN; ENSEMBL ID: ENSG00000172260; HGNC ID: 17302 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.146542
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 19 / 564012 | 33 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 41 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 104 / 3360307 | 30 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 15 / 125191 | 119 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 77 / 1100989 | 69 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 16 / 149255 | 107 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 4 / 330442 | 12 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 8 / 52413 | 152 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 4 / 51780 | 77 | |
Microarray in - Probe name: CUST_11195_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.54 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.95 ± 0.37 | |
| Basal Part of Pons | 7.16 ± 0.34 | |
| Cerebellar Cortex | 8.43 ± 0.14 | |
| Cerebellar Nuclei | 6.84 ± 0.53 | |
| Claustrum | 7.19 ± 0.57 | |
| Epithalamus | 7.96 ± 0.37 | |
| Frontal Lobe | 7.77 ± 0.48 | |
| Globus Pallidus | 6.28 ± 0.5 | |
| Hypothalamus | 8.13 ± 0.62 | |
| Insula | 8.16 ± 0.34 | |
| Limbic Lobe | 8.03 ± 0.62 | |
| Mesencephalon | 7.7 ± 0.73 | |
| Myelencephalon | 7.79 ± 0.71 | |
| Occipital Lobe | 8.57 ± 0.55 | |
| Parietal Lobe | 7.84 ± 0.52 | |
| Pontine Tegmentum | 7.95 ± 0.63 | |
| Striatum | 6.76 ± 0.77 | |
| Subthalamus | 7.2 ± 0.5 | |
| Temporal Lobe | 8.05 ± 0.4 | |
| Thalamus | 7.1 ± 0.65 | |
| White Matter | 6.8 ± 0.58 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Negr1 | CB | Cerebellum | 56.83 | |
| 40.36 | | |||
| Negr1 | CTX | Cerebral cortex | 81.71 | |
| 70.31 | | |||
| Negr1 | HIP | Hippocampal region | 66.8 | |
| 54.28 | | |||
| Negr1 | HPF | Hippocampal formation | 68.39 | |
| 61.63 | | |||
| Negr1 | HY | Hypothalamus | 44.8 | |
| 35.86 | | |||
| Negr1 | LSX | Lateral septal complex | 8.34 | |
| 5.73 | | |||
| Negr1 | MB | Midbrain | 34.33 | |
| 29.25 | | |||
| Negr1 | MY | Medulla | 53.02 | |
| 51.49 | | |||
| Negr1 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Negr1 | P | Pons | 51.95 | |
| 49.53 | | |||
| Negr1 | PAL | Pallidum | 39.59 | |
| 39.74 | | |||
| Negr1 | RHP | Retrohippocampal region | 70.9 | |
| 70.17 | | |||
| Negr1 | sAMY | Striatum-like amygdalar nuclei | 74.41 | |
| 62.41 | | |||
| Negr1 | STR | Striatum | 36.28 | |
| 28.58 | | |||
| Negr1 | STRd | Striatum dorsal region | 24.1 | |
| 18.08 | | |||
| Negr1 | STRv | Striatum ventral region | 71.75 | |
| 54.21 | | |||
| Negr1 | TH | Thalamus | 24.71 | |
| 20.12 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00065630 | 28 | 100 | 127 | DYSLQIQNVDVTDDGPYTCSVQTQHTPR | Peptide Atlas |