Annotation Detail for SNX33
Basic Information Top
| Gene Symbol: | SNX33 ( MGC32065,SH3PX3,SH3PXD3C,SNX30 ) |
|---|---|
| Gene Full Name: | sorting nexin 33 |
| Band: | 15q24.2 |
| Quick Links | Entrez ID:257364; OMIM: NA; Uniprot ID:SNX33_HUMAN; ENSEMBL ID: ENSG00000173548; HGNC ID: 28468 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.8705
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 2 / 31097 | 64 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 36 / 1939121 | 18 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 41 / 3360307 | 12 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 2 / 1100989 | 1 |  |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 1 / 89626 | 11 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 7 / 210574 | 33 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_6847_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.91 ± 0.55 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.87 ± 0.37 | |
| Basal Part of Pons | 4.57 ± 0.63 | |
| Cerebellar Cortex | 4.96 ± 0.32 | |
| Cerebellar Nuclei | 4.7 ± 0.47 | |
| Claustrum | 4.82 ± 0.61 | |
| Epithalamus | 4.75 ± 0.4 | |
| Frontal Lobe | 4.86 ± 0.5 | |
| Globus Pallidus | 4.58 ± 0.79 | |
| Hypothalamus | 4.71 ± 0.71 | |
| Insula | 4.8 ± 0.44 | |
| Limbic Lobe | 4.88 ± 0.41 | |
| Mesencephalon | 4.68 ± 0.44 | |
| Myelencephalon | 4.8 ± 0.5 | |
| Occipital Lobe | 4.74 ± 0.36 | |
| Parietal Lobe | 4.82 ± 0.41 | |
| Pontine Tegmentum | 4.78 ± 0.42 | |
| Striatum | 4.61 ± 0.4 | |
| Subthalamus | 4.72 ± 0.57 | |
| Temporal Lobe | 4.73 ± 0.51 | |
| Thalamus | 4.74 ± 0.42 | |
| White Matter | 4.13 ± 0.62 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sh3px3 | CB | Cerebellum | 29.15 | |
| 41.55 | | |||
| Sh3px3 | CTX | Cerebral cortex | 100 | |
| 73.81 | | |||
| Sh3px3 | HIP | Hippocampal region | 44.55 | |
| 60.56 | | |||
| Sh3px3 | HPF | Hippocampal formation | 65.18 | |
| 68.54 | | |||
| Sh3px3 | HY | Hypothalamus | 56.76 | |
| 42.98 | | |||
| Sh3px3 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Sh3px3 | MB | Midbrain | 57.67 | |
| 48.83 | | |||
| Sh3px3 | MY | Medulla | 36.28 | |
| 33.16 | | |||
| Sh3px3 | OLF | Olfactory bulb | 71.47 | |
| 56.58 | | |||
| Sh3px3 | P | Pons | 45.25 | |
| 39 | | |||
| Sh3px3 | PAL | Pallidum | 57.98 | |
| 47 | | |||
| Sh3px3 | RHP | Retrohippocampal region | 100 | |
| 82.82 | | |||
| Sh3px3 | sAMY | Striatum-like amygdalar nuclei | 88.93 | |
| 64.46 | | |||
| Sh3px3 | STR | Striatum | 45.51 | |
| 31.37 | | |||
| Sh3px3 | STRd | Striatum dorsal region | 37.81 | |
| 24.81 | | |||
| Sh3px3 | STRv | Striatum ventral region | 23.35 | |
| 15.57 | | |||
| Sh3px3 | TH | Thalamus | 75.1 | |
| 60.9 | |