AutismKB 2.0

Annotation Detail for C11orf41


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Basic Information Top
Gene Symbol:C11orf41 ( C11orf69,FLJ36988,G2,MGC34830 )
Gene Full Name: chromosome 11 open reading frame 41
Band: 11p13
Quick LinksEntrez ID:25758; OMIM: 612297; Uniprot ID:CK041_HUMAN; ENSEMBL ID: ENSG00000110427; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus20 / 56401235
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult24 / 193912112
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma1 / 1068839
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal97 / 336030728
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma2 / 4635643
skin tumor2 / 12494916
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain73 / 110098966
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye4 / 21105418
heart2 / 8962622
intestine3 / 23447212
kidney0 / 2117770 
larynx0 / 241450 
liver2 / 2077439
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary1 / 1020519
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214772_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.45
Adipocyte5.7
AdrenalCortex6.6
Adrenalgland5.15
Amygdala6.3
Appendix6.85
AtrioventricularNode6.4
BDCA4+_DentriticCells5.7
Bonemarrow6.85
BronchialEpithelialCells5.35
CD105+_Endothelial5.55
CD14+_Monocytes6.15
CD19+_BCells(neg._sel.)6.25
CD33+_Myeloid7.1
CD34+7.2
CD4+_Tcells6
CD56+_NKCells6.75
CD71+_EarlyErythroid5.65
CD8+_Tcells5.1
CardiacMyocytes8.35
Caudatenucleus5.5
Cerebellum6.75
CerebellumPeduncles7.55
CiliaryGanglion6.5
CingulateCortex7.55
Colorectaladenocarcinoma5.8
DorsalRootGanglion5.45
FetalThyroid6
Fetalbrain15.65
Fetalliver5.15
Fetallung4.4
GlobusPallidus4.8
Heart8.2
Hypothalamus6.4
Kidney5.85
Leukemia_chronicMyelogenousK-5625.35
Leukemia_promyelocytic-HL-605.25
Leukemialymphoblastic(MOLT-4)4.45
Liver8
Lung6.25
Lymphnode5.05
Lymphoma_burkitts(Daudi)10.6
Lymphoma_burkitts(Raji)8.65
MedullaOblongata6.25
OccipitalLobe8
OlfactoryBulb4.75
Ovary4.25
Pancreas5.1
PancreaticIslet6.35
ParietalLobe6.95
Pituitary6.9
Placenta5.75
Pons7
PrefrontalCortex11.35
Prostate6.7
Salivarygland4.9
SkeletalMuscle7.3
Skin4.75
SmoothMuscle6.85
Spinalcord6.35
SubthalamicNucleus5.85
SuperiorCervicalGanglion9.4
TemporalLobe5.7
Testis5.1
TestisGermCell4.45
TestisIntersitial5.05
TestisLeydigCell6.15
TestisSeminiferousTubule5.1
Thalamus6.1
Thymus4.35
Thyroid7.2
Tongue6
Tonsil5.85
Trachea4.9
TrigeminalGanglion6.35
Uterus4.65
UterusCorpus6.1
WholeBlood6.1
Wholebrain7.95
colon5.75
pineal_day11.32
pineal_night8.56
retina7.45
small_intestine5.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P64121
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.41 ± 0.69
Basal Forebrain8.75 ± 0.68
Basal Part of Pons8.57 ± 0.48
Cerebellar Cortex9.32 ± 0.29
Cerebellar Nuclei8.5 ± 0.72
Claustrum9.29 ± 0.63
Epithalamus9.29 ± 0.67
Frontal Lobe9.47 ± 0.48
Globus Pallidus6.44 ± 0.9
Hypothalamus8.79 ± 0.44
Insula9.53 ± 0.29
Limbic Lobe9.48 ± 0.78
Mesencephalon8.63 ± 0.55
Myelencephalon9 ± 0.76
Occipital Lobe8.81 ± 1.11
Parietal Lobe9.43 ± 0.63
Pontine Tegmentum9.42 ± 0.69
Striatum8.6 ± 1.05
Subthalamus7.4 ± 0.65
Temporal Lobe9.53 ± 0.51
Thalamus8.99 ± 0.77
White Matter6.54 ± 0.45
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
D430041D05RikCBCerebellum31.99
78.74
D430041D05RikCTXCerebral cortex100
100
D430041D05RikHIPHippocampal region37.43
60.15
D430041D05RikHPFHippocampal formation53.65
72.12
D430041D05RikHYHypothalamus14.22
12.28
D430041D05RikLSXLateral septal complex22.06
19.04
D430041D05RikMBMidbrain25.34
26.55
D430041D05RikMYMedulla29.08
39.54
D430041D05RikOLFOlfactory bulb56.97
57.97
D430041D05RikPPons24.9
31.33
D430041D05RikPALPallidum21.34
20.68
D430041D05RikRHPRetrohippocampal region79.76
88.11
D430041D05RiksAMYStriatum-like amygdalar nuclei31.61
27.25
D430041D05RikSTRStriatum70.72
60.86
D430041D05RikSTRdStriatum dorsal region87.87
79.96
D430041D05RikSTRvStriatum ventral region40.42
30.96
D430041D05RikTHThalamus33.04
34.83
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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