Annotation Detail for PRPF40B
Basic Information Top
| Gene Symbol: | PRPF40B ( HYPC ) |
|---|---|
| Gene Full Name: | PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) |
| Band: | 12q13.12 |
| Quick Links | Entrez ID:25766; OMIM: NA; Uniprot ID:PR40B_HUMAN; ENSEMBL ID: ENSG00000110844; HGNC ID: 25031 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.706827
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 51 / 1939121 | 26 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 60 / 3360307 | 17 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 8 / 102680 | 77 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 12 / 1100989 | 10 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 2 / 89626 | 22 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 13 / 214812 | 60 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 6 / 330442 | 18 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_83_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.14 ± 0.52 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.94 ± 0.4 | |
| Basal Part of Pons | 4.82 ± 0.48 | |
| Cerebellar Cortex | 4.62 ± 0.4 | |
| Cerebellar Nuclei | 4.66 ± 0.58 | |
| Claustrum | 5.48 ± 0.64 | |
| Epithalamus | 4.63 ± 0.34 | |
| Frontal Lobe | 4.62 ± 0.49 | |
| Globus Pallidus | 5.41 ± 0.44 | |
| Hypothalamus | 4.66 ± 0.35 | |
| Insula | 4.6 ± 0.79 | |
| Limbic Lobe | 5.06 ± 0.47 | |
| Mesencephalon | 4.88 ± 0.56 | |
| Myelencephalon | 4.91 ± 0.51 | |
| Occipital Lobe | 5.21 ± 0.58 | |
| Parietal Lobe | 4.93 ± 0.5 | |
| Pontine Tegmentum | 4.77 ± 0.51 | |
| Striatum | 4.9 ± 0.59 | |
| Subthalamus | 4.08 ± 0.28 | |
| Temporal Lobe | 4.83 ± 0.45 | |
| Thalamus | 4.68 ± 0.6 | |
| White Matter | 5.19 ± 0.42 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Prpf40b | CB | Cerebellum | 1.24 | |
| 1.63 | | |||
| Prpf40b | CTX | Cerebral cortex | 1.49 | |
| 1.28 | | |||
| Prpf40b | HIP | Hippocampal region | 0.8 | |
| 0.89 | | |||
| Prpf40b | HPF | Hippocampal formation | 0.77 | |
| 0.79 | | |||
| Prpf40b | HY | Hypothalamus | 0.14 | |
| 0.18 | | |||
| Prpf40b | LSX | Lateral septal complex | 0.3 | |
| 0.24 | | |||
| Prpf40b | MB | Midbrain | 1.01 | |
| 1.1 | | |||
| Prpf40b | MY | Medulla | 3.9 | |
| 4.74 | | |||
| Prpf40b | OLF | Olfactory bulb | 0.96 | |
| 0.74 | | |||
| Prpf40b | P | Pons | 0.66 | |
| 0.81 | | |||
| Prpf40b | PAL | Pallidum | 0.35 | |
| 0.3 | | |||
| Prpf40b | RHP | Retrohippocampal region | 0.63 | |
| 0.59 | | |||
| Prpf40b | sAMY | Striatum-like amygdalar nuclei | 0.92 | |
| 0.81 | | |||
| Prpf40b | STR | Striatum | 0.4 | |
| 0.33 | | |||
| Prpf40b | STRd | Striatum dorsal region | 0.34 | |
| 0.29 | | |||
| Prpf40b | STRv | Striatum ventral region | 0.31 | |
| 0.2 | | |||
| Prpf40b | TH | Thalamus | 0.91 | |
| 0.75 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00516784 | 12 | 286 | 297 | VPSNASWEQAMK | Peptide Atlas |