AutismKB 2.0

Annotation Detail for SLC24A2


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Basic Information Top
Gene Symbol:SLC24A2 ( FLJ45149,NCKX2 )
Gene Full Name: solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
Band: 9p22.1
Quick LinksEntrez ID:25769; OMIM: 609838; Uniprot ID:NCKX2_HUMAN; ENSEMBL ID: ENSG00000155886; HGNC ID: 10976
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult54 / 193912127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor22 / 136302161
kidney tumor4 / 6895958
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia9 / 9725092
normal52 / 336030715
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain57 / 110098951
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine0 / 2344720 
kidney5 / 21177723
larynx21 / 24145869
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220867_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.85
Adipocyte5
AdrenalCortex5
Adrenalgland4.1
Amygdala5.05
Appendix5.25
AtrioventricularNode9.05
BDCA4+_DentriticCells5.05
Bonemarrow4.8
BronchialEpithelialCells4.7
CD105+_Endothelial5.05
CD14+_Monocytes4.95
CD19+_BCells(neg._sel.)4.9
CD33+_Myeloid6.25
CD34+5.95
CD4+_Tcells5.2
CD56+_NKCells5.7
CD71+_EarlyErythroid4.5
CD8+_Tcells4.65
CardiacMyocytes5.9
Caudatenucleus4.6
Cerebellum4.05
CerebellumPeduncles5.5
CiliaryGanglion16.15
CingulateCortex4.95
Colorectaladenocarcinoma4.85
DorsalRootGanglion5.95
FetalThyroid4.7
Fetalbrain4.8
Fetalliver4.15
Fetallung3.8
GlobusPallidus3.75
Heart6.3
Hypothalamus5.35
Kidney3.9
Leukemia_chronicMyelogenousK-5624.3
Leukemia_promyelocytic-HL-604.9
Leukemialymphoblastic(MOLT-4)3.95
Liver7.7
Lung5.3
Lymphnode4.2
Lymphoma_burkitts(Daudi)6.15
Lymphoma_burkitts(Raji)6.7
MedullaOblongata5.2
OccipitalLobe4.25
OlfactoryBulb3.8
Ovary3.35
Pancreas5.05
PancreaticIslet5.15
ParietalLobe5.1
Pituitary5.6
Placenta4.85
Pons6.05
PrefrontalCortex5.95
Prostate5.65
Salivarygland3.85
SkeletalMuscle6.25
Skin5.8
SmoothMuscle5.4
Spinalcord5.2
SubthalamicNucleus4.4
SuperiorCervicalGanglion7.5
TemporalLobe4.45
Testis4.15
TestisGermCell4.1
TestisIntersitial6.15
TestisLeydigCell4.75
TestisSeminiferousTubule4.1
Thalamus4.9
Thymus3.7
Thyroid6.05
Tongue4.9
Tonsil4.7
Trachea3.95
TrigeminalGanglion5.35
Uterus3.95
UterusCorpus5
WholeBlood5.25
Wholebrain4.45
colon4.75
pineal_day6
pineal_night5.82
retina5.725
small_intestine4.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14013_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.06 ± 0.59
Basal Forebrain6.84 ± 0.37
Basal Part of Pons8.17 ± 0.29
Cerebellar Cortex6.47 ± 0.38
Cerebellar Nuclei7.91 ± 0.27
Claustrum6.55 ± 0.57
Epithalamus5.8 ± 0.87
Frontal Lobe7.19 ± 0.62
Globus Pallidus7.33 ± 0.37
Hypothalamus6.35 ± 0.65
Insula6.45 ± 0.42
Limbic Lobe6.88 ± 0.57
Mesencephalon6.83 ± 0.57
Myelencephalon7.06 ± 0.72
Occipital Lobe7.44 ± 0.52
Parietal Lobe7.39 ± 0.58
Pontine Tegmentum7.01 ± 0.48
Striatum7.45 ± 0.51
Subthalamus7.76 ± 0.29
Temporal Lobe6.91 ± 0.61
Thalamus7.7 ± 0.46
White Matter8.66 ± 0.37
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc24a2CBCerebellum98.27
100
Slc24a2CTXCerebral cortex100
100
Slc24a2HIPHippocampal region100
100
Slc24a2HPFHippocampal formation100
100
Slc24a2HYHypothalamus75.91
86.07
Slc24a2LSXLateral septal complex41.92
50.96
Slc24a2MBMidbrain94.75
100
Slc24a2MYMedulla92.38
100
Slc24a2OLFOlfactory bulb100
100
Slc24a2PPons96.01
100
Slc24a2PALPallidum85.15
100
Slc24a2RHPRetrohippocampal region100
100
Slc24a2sAMYStriatum-like amygdalar nuclei52.78
51.11
Slc24a2STRStriatum100
100
Slc24a2STRdStriatum dorsal region100
100
Slc24a2STRvStriatum ventral region93.49
94.08
Slc24a2THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00064459 8 377 384 CHVDENER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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