AutismKB 2.0

Annotation Detail for CCDC19


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Basic Information Top
Gene Symbol:CCDC19 ( NESG1 )
Gene Full Name: coiled-coil domain containing 19
Band: 1q22
Quick LinksEntrez ID:25790; OMIM: 605152; Uniprot ID:CCD19_HUMAN; ENSEMBL ID: ENSG00000213085; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult15 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal41 / 336030712
ovarian tumor2 / 7668226
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain2 / 11009891
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney3 / 21177714
larynx0 / 241450 
liver0 / 2077430 
lung12 / 33697435
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta4 / 28082514
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis27 / 33044281
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220308_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.15
Adipocyte5.2
AdrenalCortex9.8
Adrenalgland4.45
Amygdala5.2
Appendix5.45
AtrioventricularNode4.4
BDCA4+_DentriticCells5.3
Bonemarrow7.7
BronchialEpithelialCells5.2
CD105+_Endothelial5.45
CD14+_Monocytes5.4
CD19+_BCells(neg._sel.)5.35
CD33+_Myeloid6.35
CD34+6.1
CD4+_Tcells5.45
CD56+_NKCells5.75
CD71+_EarlyErythroid4.9
CD8+_Tcells4.75
CardiacMyocytes7.6
Caudatenucleus4.65
Cerebellum4.2
CerebellumPeduncles6.15
CiliaryGanglion3.9
CingulateCortex5.4
Colorectaladenocarcinoma5.25
DorsalRootGanglion4.15
FetalThyroid5.45
Fetalbrain5.25
Fetalliver4.7
Fetallung5.05
GlobusPallidus3.9
Heart7.05
Hypothalamus5.5
Kidney4.35
Leukemia_chronicMyelogenousK-5624.75
Leukemia_promyelocytic-HL-605.1
Leukemialymphoblastic(MOLT-4)5.25
Liver7.15
Lung5.6
Lymphnode5.25
Lymphoma_burkitts(Daudi)6.8
Lymphoma_burkitts(Raji)7.5
MedullaOblongata5.9
OccipitalLobe4.7
OlfactoryBulb4.1
Ovary3.85
Pancreas4.25
PancreaticIslet5.55
ParietalLobe5.55
Pituitary6.15
Placenta5.15
Pons4.95
PrefrontalCortex6.15
Prostate6.05
Salivarygland4.15
SkeletalMuscle6.4
Skin4.2
SmoothMuscle8.1
Spinalcord5.5
SubthalamicNucleus4.8
SuperiorCervicalGanglion6.25
TemporalLobe4.75
Testis10.2
TestisGermCell7.35
TestisIntersitial34.55
TestisLeydigCell16.7
TestisSeminiferousTubule11.6
Thalamus5.25
Thymus4.05
Thyroid6.4
Tongue5.45
Tonsil6.05
Trachea8.7
TrigeminalGanglion5.45
Uterus4.15
UterusCorpus4.8
WholeBlood6.35
Wholebrain4.2
colon5.2
pineal_day6.26
pineal_night6.14
retina6.2
small_intestine4.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1028_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.23 ± 1.25
Basal Forebrain1.46 ± 0.24
Basal Part of Pons1.2 ± 0.45
Cerebellar Cortex1.28 ± 0.48
Cerebellar Nuclei1.92 ± 0.86
Claustrum2.44 ± 0.88
Epithalamus4.87 ± 1.21
Frontal Lobe1.54 ± 1.09
Globus Pallidus2.16 ± 0.57
Hypothalamus1.62 ± 0.76
Insula1.4 ± 0.54
Limbic Lobe1.73 ± 0.96
Mesencephalon1.94 ± 1.03
Myelencephalon1.82 ± 1.12
Occipital Lobe1.73 ± 0.84
Parietal Lobe1.66 ± 0.88
Pontine Tegmentum1.6 ± 0.76
Striatum2.62 ± 1.53
Subthalamus1.67 ± 0.74
Temporal Lobe1.52 ± 0.83
Thalamus1.47 ± 0.67
White Matter2.26 ± 0.8
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ccdc19CBCerebellum0
0
Ccdc19CTXCerebral cortex0
0
Ccdc19HIPHippocampal region0
0
Ccdc19HPFHippocampal formation0
0
Ccdc19HYHypothalamus0
0
Ccdc19LSXLateral septal complex0
0
Ccdc19MBMidbrain0
0
Ccdc19MYMedulla0
0
Ccdc19OLFOlfactory bulb0
0
Ccdc19PPons0
0
Ccdc19PALPallidum0
0
Ccdc19RHPRetrohippocampal region0
0
Ccdc19sAMYStriatum-like amygdalar nuclei0
0
Ccdc19STRStriatum0
0
Ccdc19STRdStriatum dorsal region0
0
Ccdc19STRvStriatum ventral region0
0
Ccdc19THThalamus0
0
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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