AutismKB 2.0

Annotation Detail for YIPF3


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Basic Information Top
Gene Symbol:YIPF3 ( C6orf109,DKFZp566C243,FinGER3,KLIP1,dJ337H4.3 )
Gene Full Name: Yip1 domain family, member 3
Band: 6p21.1
Quick LinksEntrez ID:25844; OMIM: 609775; Uniprot ID:YIPF3_HUMAN; ENSEMBL ID: ENSG00000137207; HGNC ID: 21023
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst4 / 6231964
fetus46 / 56401281
neonate1 / 3109732
infant2 / 2362084
juvenile4 / 5555671
adult249 / 1939121128
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor15 / 94178159
cervical tumor4 / 34366116
chondrosarcoma13 / 82823156
colorectal tumor11 / 11424696
esophageal tumor1 / 1729057
gastrointestinal tumor17 / 119369142
germ cell tumor14 / 26384553
glioma9 / 10688384
head and neck tumor8 / 13630258
kidney tumor11 / 68959159
leukemia13 / 95842135
liver tumor13 / 96359134
lung tumor20 / 103127193
lymphoma8 / 71755111
non-neoplasia4 / 9725041
normal329 / 336030797
ovarian tumor30 / 76682391
pancreatic tumor37 / 104616353
primitive neuroectodermal tumor of the CNS51 / 125680405
prostate cancer20 / 102680194
retinoblastoma8 / 46356172
skin tumor34 / 124949272
soft tissue/muscle tissue tumor16 / 125191127
uterine tumor11 / 90257121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland1 / 3319730
ascites2 / 4001549
bladder0 / 297570 
blood22 / 123478178
bone9 / 71655125
bone marrow3 / 4880161
brain111 / 1100989100
cervix8 / 48171166
connective tissue11 / 14925573
ear0 / 162120 
embryonic tissue30 / 215722139
esophagus1 / 2020949
eye26 / 211054123
heart8 / 8962689
intestine30 / 234472127
kidney22 / 211777103
larynx1 / 2414541
liver24 / 207743115
lung37 / 336974109
lymph4 / 4427090
lymph node6 / 9161065
mammary gland17 / 153271110
mouth3 / 6705244
muscle14 / 107715129
nerve1 / 1576863
ovary32 / 102051313
pancreas39 / 214812181
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta72 / 280825256
prostate25 / 189345132
salivary gland4 / 20155198
skin40 / 210574189
spleen6 / 53952111
stomach13 / 96619134
testis17 / 33044251
thymus2 / 8113124
thyroid7 / 47473147
tonsil4 / 16999235
trachea0 / 524130 
umbilical cord1 / 1368073
uterus21 / 23287890
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 216338_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts24.9
Adipocyte23.25
AdrenalCortex22.65
Adrenalgland38.4
Amygdala27.5
Appendix17.8
AtrioventricularNode15
BDCA4+_DentriticCells26.35
Bonemarrow20.1
BronchialEpithelialCells40.55
CD105+_Endothelial14.3
CD14+_Monocytes35.75
CD19+_BCells(neg._sel.)21.8
CD33+_Myeloid29.25
CD34+21.85
CD4+_Tcells17.4
CD56+_NKCells29.45
CD71+_EarlyErythroid20.75
CD8+_Tcells16.05
CardiacMyocytes57.25
Caudatenucleus19.35
Cerebellum18.7
CerebellumPeduncles25.3
CiliaryGanglion13.65
CingulateCortex22.85
Colorectaladenocarcinoma18.6
DorsalRootGanglion15.2
FetalThyroid51.35
Fetalbrain22.3
Fetalliver16.55
Fetallung39.8
GlobusPallidus16.1
Heart53.55
Hypothalamus32.1
Kidney22.35
Leukemia_chronicMyelogenousK-56220.75
Leukemia_promyelocytic-HL-609.25
Leukemialymphoblastic(MOLT-4)17.35
Liver45.6
Lung185.75
Lymphnode16.65
Lymphoma_burkitts(Daudi)18.2
Lymphoma_burkitts(Raji)24.2
MedullaOblongata19
OccipitalLobe21.35
OlfactoryBulb19.4
Ovary13.15
Pancreas14.9
PancreaticIslet24.1
ParietalLobe16.95
Pituitary29.95
Placenta127.8
Pons15.4
PrefrontalCortex29
Prostate138.3
Salivarygland18
SkeletalMuscle19.55
Skin14.15
SmoothMuscle115.25
Spinalcord28.2
SubthalamicNucleus14.75
SuperiorCervicalGanglion19.25
TemporalLobe16
Testis24.55
TestisGermCell21.3
TestisIntersitial15.6
TestisLeydigCell19.85
TestisSeminiferousTubule20.2
Thalamus24.3
Thymus26.55
Thyroid67.15
Tongue19.55
Tonsil21.95
Trachea26
TrigeminalGanglion18.7
Uterus36.3
UterusCorpus19.15
WholeBlood125.2
Wholebrain74.25
colon22.15
pineal_day43.9
pineal_night55.36
retina33.45
small_intestine17.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7240_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.29 ± 0.77
Basal Forebrain5.91 ± 0.23
Basal Part of Pons6.14 ± 0.48
Cerebellar Cortex6.06 ± 0.57
Cerebellar Nuclei5.85 ± 0.36
Claustrum5.24 ± 0.73
Epithalamus5.9 ± 0.73
Frontal Lobe6.12 ± 0.52
Globus Pallidus5.51 ± 0.1
Hypothalamus6.15 ± 0.48
Insula6.05 ± 0.41
Limbic Lobe5.58 ± 0.65
Mesencephalon5.85 ± 0.46
Myelencephalon5.9 ± 0.58
Occipital Lobe5.33 ± 0.56
Parietal Lobe5.84 ± 0.59
Pontine Tegmentum5.79 ± 0.6
Striatum5.54 ± 0.48
Subthalamus5.77 ± 0.63
Temporal Lobe6.01 ± 0.54
Thalamus6.03 ± 0.53
White Matter5.83 ± 0.67
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Yipf3CBCerebellum15.32
41.91
Yipf3CTXCerebral cortex29.17
23.41
Yipf3HIPHippocampal region40.59
60.93
Yipf3HPFHippocampal formation41.84
51.04
Yipf3HYHypothalamus2.52
2.29
Yipf3LSXLateral septal complex4.29
3.34
Yipf3MBMidbrain3.21
4.02
Yipf3MYMedulla3.31
6.09
Yipf3OLFOlfactory bulb10.63
9.87
Yipf3PPons3.19
6.15
Yipf3PALPallidum5.14
4.9
Yipf3RHPRetrohippocampal region44.45
40.63
Yipf3sAMYStriatum-like amygdalar nuclei2.25
1.62
Yipf3STRStriatum4.34
3.88
Yipf3STRdStriatum dorsal region4.87
4.69
Yipf3STRvStriatum ventral region3.4
2.51
Yipf3THThalamus13.89
13.89
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00041633 27 22 48 LREEEVDADAADAAAAEEEDGEFLGMK Peptide Atlas
YIPF3_HUMAN_2 11 2 12 ATTAAPAGGAR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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