AutismKB 2.0

Annotation Detail for ANAPC13


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Basic Information Top
Gene Symbol:ANAPC13 ( APC13,DKFZp566D193,SWM1 )
Gene Full Name: anaphase promoting complex subunit 13
Band: 3q22.2
Quick LinksEntrez ID:25847; OMIM: NA; Uniprot ID:APC13_HUMAN; ENSEMBL ID: ENSG00000129055; HGNC ID: 24540
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst2 / 6231932
fetus50 / 56401288
neonate0 / 310970 
infant5 / 23620211
juvenile1 / 5555617
adult166 / 193912185
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma26 / 174751487
breast (mammary gland) tumor7 / 9417874
cervical tumor3 / 3436687
chondrosarcoma3 / 8282336
colorectal tumor11 / 11424696
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor21 / 26384579
glioma17 / 106883159
head and neck tumor3 / 13630222
kidney tumor9 / 68959130
leukemia15 / 95842156
liver tumor6 / 9635962
lung tumor3 / 10312729
lymphoma3 / 7175541
non-neoplasia5 / 9725051
normal305 / 336030790
ovarian tumor5 / 7668265
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer8 / 10268077
retinoblastoma3 / 4635664
skin tumor11 / 12494988
soft tissue/muscle tissue tumor31 / 125191247
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland3 / 3319790
ascites0 / 400150 
bladder27 / 29757907
blood8 / 12347864
bone4 / 7165555
bone marrow14 / 48801286
brain88 / 110098979
cervix4 / 4817183
connective tissue23 / 149255154
ear1 / 1621261
embryonic tissue13 / 21572260
esophagus0 / 202090 
eye17 / 21105480
heart9 / 89626100
intestine19 / 23447281
kidney27 / 211777127
larynx1 / 2414541
liver22 / 207743105
lung21 / 33697462
lymph3 / 4427067
lymph node7 / 9161076
mammary gland15 / 15327197
mouth0 / 670520 
muscle12 / 107715111
nerve1 / 1576863
ovary5 / 10205148
pancreas18 / 21481283
parathyroid12 / 20539584
pharynx10 / 41328241
pituitary gland5 / 16585301
placenta23 / 28082581
prostate17 / 18934589
salivary gland8 / 20155396
skin22 / 210574104
spleen0 / 539520 
stomach2 / 9661920
testis31 / 33044293
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus21 / 23287890
vascular11 / 51780212
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209001_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts417.15
Adipocyte144.8
AdrenalCortex98.4
Adrenalgland309.45
Amygdala353.65
Appendix76.3
AtrioventricularNode40.6
BDCA4+_DentriticCells282.7
Bonemarrow65.05
BronchialEpithelialCells280.6
CD105+_Endothelial228.2
CD14+_Monocytes370.4
CD19+_BCells(neg._sel.)222.5
CD33+_Myeloid345.8
CD34+387.7
CD4+_Tcells135.35
CD56+_NKCells309.35
CD71+_EarlyErythroid42.4
CD8+_Tcells182.65
CardiacMyocytes94.7
Caudatenucleus150.7
Cerebellum75
CerebellumPeduncles49.65
CiliaryGanglion41.2
CingulateCortex158.35
Colorectaladenocarcinoma121.35
DorsalRootGanglion30.8
FetalThyroid162.35
Fetalbrain167.55
Fetalliver213.35
Fetallung161.2
GlobusPallidus75.55
Heart33.45
Hypothalamus422.4
Kidney263.05
Leukemia_chronicMyelogenousK-562171.05
Leukemia_promyelocytic-HL-60306.4
Leukemialymphoblastic(MOLT-4)127.35
Liver56.5
Lung66.35
Lymphnode163.3
Lymphoma_burkitts(Daudi)262.15
Lymphoma_burkitts(Raji)253.1
MedullaOblongata159.95
OccipitalLobe191.25
OlfactoryBulb127.6
Ovary43.85
Pancreas51.15
PancreaticIslet328.1
ParietalLobe114.3
Pituitary491.35
Placenta155.7
Pons78.05
PrefrontalCortex318.95
Prostate259.5
Salivarygland208.6
SkeletalMuscle43.95
Skin49.1
SmoothMuscle281.6
Spinalcord372.2
SubthalamicNucleus111.15
SuperiorCervicalGanglion152.15
TemporalLobe76.3
Testis141.05
TestisGermCell94.85
TestisIntersitial40.1
TestisLeydigCell64.25
TestisSeminiferousTubule66.4
Thalamus192
Thymus48.25
Thyroid661.5
Tongue89.55
Tonsil69.5
Trachea196.4
TrigeminalGanglion51.4
Uterus162.9
UterusCorpus89.25
WholeBlood396.3
Wholebrain195.25
colon169.1
pineal_day821.14
pineal_night709.42
retina360.35
small_intestine223.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11246_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.18 ± 0.38
Basal Forebrain6.86 ± 0.4
Basal Part of Pons7.21 ± 0.23
Cerebellar Cortex6.88 ± 0.33
Cerebellar Nuclei7.19 ± 0.23
Claustrum7.17 ± 0.49
Epithalamus6.65 ± 0.63
Frontal Lobe7.02 ± 0.42
Globus Pallidus7.31 ± 0.33
Hypothalamus6.9 ± 0.24
Insula6.92 ± 0.5
Limbic Lobe7.12 ± 0.47
Mesencephalon6.95 ± 0.4
Myelencephalon7.04 ± 0.4
Occipital Lobe7.06 ± 0.41
Parietal Lobe7.05 ± 0.35
Pontine Tegmentum7.04 ± 0.3
Striatum7.06 ± 0.45
Subthalamus6.92 ± 0.27
Temporal Lobe7.02 ± 0.39
Thalamus7.03 ± 0.35
White Matter7.28 ± 0.09
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Anapc13CBCerebellum15.42
16.09
Anapc13CTXCerebral cortex15.2
11.12
Anapc13HIPHippocampal region13.3
13.11
Anapc13HPFHippocampal formation14.71
12.78
Anapc13HYHypothalamus6.11
5.04
Anapc13LSXLateral septal complex1.7
1.38
Anapc13MBMidbrain7.63
7.27
Anapc13MYMedulla9.89
11.43
Anapc13OLFOlfactory bulb27.22
20.48
Anapc13PPons8.41
9.8
Anapc13PALPallidum6.8
6.54
Anapc13RHPRetrohippocampal region18.43
12.96
Anapc13sAMYStriatum-like amygdalar nuclei23.44
17.4
Anapc13STRStriatum11
8.58
Anapc13STRdStriatum dorsal region7.87
5.94
Anapc13STRvStriatum ventral region18.6
14.93
Anapc13THThalamus6.4
5.55
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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