AutismKB 2.0

Annotation Detail for PARM1


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Basic Information Top
Gene Symbol:PARM1 ( Cipar1,DKFZP564O0823,PARM-1,WSC4 )
Gene Full Name: prostate androgen-regulated mucin-like protein 1
Band: 4q13.3
Quick LinksEntrez ID:25849; OMIM: NA; Uniprot ID:PARM1_HUMAN; ENSEMBL ID: ENSG00000169116; HGNC ID: 24536
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst0 / 623190 
fetus15 / 56401226
neonate4 / 31097128
infant1 / 2362042
juvenile0 / 555560 
adult162 / 193912183
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor16 / 114246140
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor5 / 13630236
kidney tumor2 / 6895929
leukemia2 / 9584220
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal271 / 336030780
ovarian tumor1 / 7668213
pancreatic tumor10 / 10461695
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow0 / 488010 
brain93 / 110098984
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye16 / 21105475
heart8 / 8962689
intestine31 / 234472132
kidney18 / 21177784
larynx0 / 241450 
liver4 / 20774319
lung9 / 33697426
lymph1 / 4427022
lymph node1 / 9161010
mammary gland5 / 15327132
mouth2 / 6705229
muscle13 / 107715120
nerve1 / 1576863
ovary2 / 10205119
pancreas38 / 214812176
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland1 / 1658560
placenta32 / 280825113
prostate20 / 189345105
salivary gland0 / 201550 
skin0 / 2105740 
spleen1 / 5395218
stomach3 / 9661931
testis4 / 33044212
thymus1 / 8113112
thyroid6 / 47473126
tonsil0 / 169990 
trachea8 / 52413152
umbilical cord4 / 13680292
uterus15 / 23287864
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204687_at
Cell line Expression level Expression bar
721_B_lymphoblasts15.2
Adipocyte17.85
AdrenalCortex7.3
Adrenalgland6.35
Amygdala7.45
Appendix11.4
AtrioventricularNode5.05
BDCA4+_DentriticCells7.85
Bonemarrow6.5
BronchialEpithelialCells6
CD105+_Endothelial5.95
CD14+_Monocytes6.55
CD19+_BCells(neg._sel.)29.65
CD33+_Myeloid7.1
CD34+7.1
CD4+_Tcells6.05
CD56+_NKCells6.65
CD71+_EarlyErythroid5.15
CD8+_Tcells5.4
CardiacMyocytes8.3
Caudatenucleus6.15
Cerebellum5.6
CerebellumPeduncles7.85
CiliaryGanglion4.85
CingulateCortex7
Colorectaladenocarcinoma6.75
DorsalRootGanglion5.1
FetalThyroid13.75
Fetalbrain6.1
Fetalliver5.9
Fetallung6.4
GlobusPallidus5.05
Heart12.7
Hypothalamus7.25
Kidney12.1
Leukemia_chronicMyelogenousK-5625.85
Leukemia_promyelocytic-HL-605.35
Leukemialymphoblastic(MOLT-4)5
Liver9.15
Lung10.25
Lymphnode5.85
Lymphoma_burkitts(Daudi)7.85
Lymphoma_burkitts(Raji)9
MedullaOblongata6.25
OccipitalLobe6.25
OlfactoryBulb5.5
Ovary4.6
Pancreas6.8
PancreaticIslet74.65
ParietalLobe7.3
Pituitary27.1
Placenta27.2
Pons6.5
PrefrontalCortex8.6
Prostate26.35
Salivarygland5.55
SkeletalMuscle8.45
Skin5.15
SmoothMuscle7.5
Spinalcord6.9
SubthalamicNucleus6.15
SuperiorCervicalGanglion8.95
TemporalLobe7.2
Testis6.55
TestisGermCell6
TestisIntersitial5.75
TestisLeydigCell6.8
TestisSeminiferousTubule5.85
Thalamus6.85
Thymus6.6
Thyroid17.95
Tongue6.7
Tonsil7
Trachea7.7
TrigeminalGanglion6.7
Uterus6.4
UterusCorpus6.2
WholeBlood6.8
Wholebrain7.2
colon63.2
pineal_day150.74
pineal_night208.44
retina21.325
small_intestine6.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P260371
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.7 ± 0.64
Basal Forebrain4.25 ± 0.2
Basal Part of Pons3.77 ± 0.26
Cerebellar Cortex4.01 ± 0.54
Cerebellar Nuclei3.96 ± 0.46
Claustrum3.98 ± 0.68
Epithalamus4.44 ± 0.34
Frontal Lobe4.67 ± 0.61
Globus Pallidus3.83 ± 0.95
Hypothalamus4.91 ± 0.66
Insula4.59 ± 0.58
Limbic Lobe4.82 ± 0.8
Mesencephalon4.55 ± 0.63
Myelencephalon4.65 ± 0.66
Occipital Lobe5.33 ± 0.78
Parietal Lobe4.87 ± 0.61
Pontine Tegmentum5.03 ± 0.74
Striatum4.81 ± 0.68
Subthalamus4.81 ± 0.3
Temporal Lobe4.73 ± 0.58
Thalamus4.66 ± 0.63
White Matter3.4 ± 0.35
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
9130213B05RikCBCerebellum41.03
29.67
9130213B05RikCTXCerebral cortex57.31
67.56
9130213B05RikHIPHippocampal region34.57
54.37
9130213B05RikHPFHippocampal formation64.17
86.88
9130213B05RikHYHypothalamus48.99
48.87
9130213B05RikLSXLateral septal complex29.89
29.51
9130213B05RikMBMidbrain44.1
44.26
9130213B05RikMYMedulla39.97
49.74
9130213B05RikOLFOlfactory bulb47.18
40.92
9130213B05RikPPons39.14
47.05
9130213B05RikPALPallidum62.83
82.51
9130213B05RikRHPRetrohippocampal region100
100
9130213B05RiksAMYStriatum-like amygdalar nuclei57.67
55.48
9130213B05RikSTRStriatum21.32
21.2
9130213B05RikSTRdStriatum dorsal region13.7
13.48
9130213B05RikSTRvStriatum ventral region21.78
22.4
9130213B05RikTHThalamus10.99
10.52
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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